Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
LDB2O43679 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
LDB2O43679 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
LDB2O43679 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.82■■□□□ 1.08
LDB2O43679 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LDB2O43679 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LDB2O43679 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LDB2O43679 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.82■■□□□ 1.08
LDB2O43679 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LDB2O43679 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LDB2O43679 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LDB2O43679 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.82■■□□□ 1.08
LDB2O43679 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.82■■□□□ 1.08
LDB2O43679 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.82■■□□□ 1.08
LDB2O43679 AC110285.6-201ENST00000617652 491 ntBASIC21.82■■□□□ 1.08
LDB2O43679 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.82■■□□□ 1.08
LDB2O43679 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.82■■□□□ 1.08
LDB2O43679 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.82■■□□□ 1.08
LDB2O43679 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LDB2O43679 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
LDB2O43679 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.81■■□□□ 1.08
LDB2O43679 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.81■■□□□ 1.08
LDB2O43679 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LDB2O43679 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LDB2O43679 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDB2O43679 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDB2O43679 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDB2O43679 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LDB2O43679 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.8■■□□□ 1.08
LDB2O43679 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
LDB2O43679 BX842568.3-201ENST00000418104 571 ntBASIC21.8■■□□□ 1.08
LDB2O43679 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.8■■□□□ 1.08
LDB2O43679 AC079089.2-201ENST00000531211 1277 ntBASIC21.8■■□□□ 1.08
LDB2O43679 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LDB2O43679 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
LDB2O43679 AC106739.1-201ENST00000617035 715 ntBASIC21.8■■□□□ 1.08
LDB2O43679 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LDB2O43679 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDB2O43679 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.79■■□□□ 1.08
LDB2O43679 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.79■■□□□ 1.08
LDB2O43679 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
LDB2O43679 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.79■■□□□ 1.08
LDB2O43679 PBX2P1-201ENST00000493219 1291 ntBASIC21.79■■□□□ 1.08
LDB2O43679 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.79■■□□□ 1.08
LDB2O43679 AP005435.1-201ENST00000529293 1178 ntBASIC21.79■■□□□ 1.08
LDB2O43679 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LDB2O43679 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LDB2O43679 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
LDB2O43679 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
LDB2O43679 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
LDB2O43679 AC010141.3-201ENST00000456659 717 ntBASIC21.78■■□□□ 1.08
LDB2O43679 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.78■■□□□ 1.08
LDB2O43679 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
LDB2O43679 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LDB2O43679 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LDB2O43679 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LDB2O43679 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
LDB2O43679 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.08
LDB2O43679 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDB2O43679 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LDB2O43679 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
LDB2O43679 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDB2O43679 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.77■■□□□ 1.08
LDB2O43679 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.77■■□□□ 1.08
LDB2O43679 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.77■■□□□ 1.08
LDB2O43679 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LDB2O43679 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
LDB2O43679 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.77■■□□□ 1.08
LDB2O43679 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
LDB2O43679 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
LDB2O43679 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
LDB2O43679 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LDB2O43679 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.76■■□□□ 1.07
LDB2O43679 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LDB2O43679 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.76■■□□□ 1.07
LDB2O43679 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.76■■□□□ 1.07
LDB2O43679 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.76■■□□□ 1.07
LDB2O43679 AC233992.3-201ENST00000607491 485 ntBASIC21.76■■□□□ 1.07
LDB2O43679 AC087239.1-201ENST00000622671 572 ntBASIC21.76■■□□□ 1.07
LDB2O43679 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.76■■□□□ 1.07
LDB2O43679 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LDB2O43679 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
LDB2O43679 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.76■■□□□ 1.07
LDB2O43679 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.76■■□□□ 1.07
LDB2O43679 C11orf96-202ENST00000528572 1834 ntBASIC21.76■■□□□ 1.07
LDB2O43679 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDB2O43679 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDB2O43679 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDB2O43679 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
LDB2O43679 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.75■■□□□ 1.07
LDB2O43679 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDB2O43679 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms