Protein–RNA interactions for Protein: Q9UJU5

FOXD3, Forkhead box protein D3, humanhuman

Predicted RBP Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXD3Q9UJU5 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.78■□□□□ 0.76
FOXD3Q9UJU5 LINC01529-204ENST00000636474 1715 ntBASIC19.78■□□□□ 0.76
FOXD3Q9UJU5 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 DUX4L4-201ENST00000566884 1269 ntBASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 AC126544.1-201ENST00000580842 1059 ntBASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 pRNA.6-201ENST00000610482 90 ntBASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 pRNA.5-201ENST00000612139 90 ntBASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 pRNA.11-201ENST00000618423 90 ntBASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 pRNA.13-201ENST00000619112 90 ntBASIC19.77■□□□□ 0.76
FOXD3Q9UJU5 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
FOXD3Q9UJU5 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 AC087623.3-201ENST00000607047 1098 ntBASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXD3Q9UJU5 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXD3Q9UJU5 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXD3Q9UJU5 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXD3Q9UJU5 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXD3Q9UJU5 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
FOXD3Q9UJU5 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXD3Q9UJU5 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
FOXD3Q9UJU5 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.75■□□□□ 0.75
FOXD3Q9UJU5 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 AL162430.1-201ENST00000480705 870 ntBASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXD3Q9UJU5 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
FOXD3Q9UJU5 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.72■□□□□ 0.75
FOXD3Q9UJU5 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.72■□□□□ 0.75
FOXD3Q9UJU5 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXD3Q9UJU5 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
FOXD3Q9UJU5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
FOXD3Q9UJU5 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.72■□□□□ 0.75
FOXD3Q9UJU5 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXD3Q9UJU5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 AC034268.1-201ENST00000441047 882 ntBASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXD3Q9UJU5 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXD3Q9UJU5 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
FOXD3Q9UJU5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXD3Q9UJU5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.69■□□□□ 0.74
FOXD3Q9UJU5 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 151.5 ms