Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
BLOC1S4Q9NUP1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
BLOC1S4Q9NUP1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.75■■□□□ 1.55
BLOC1S4Q9NUP1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.75■■□□□ 1.55
BLOC1S4Q9NUP1 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 AC004687.1-201ENST00000579003 1625 ntBASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
BLOC1S4Q9NUP1 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.73■■□□□ 1.55
BLOC1S4Q9NUP1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
BLOC1S4Q9NUP1 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC24.73■■□□□ 1.55
BLOC1S4Q9NUP1 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC24.73■■□□□ 1.55
BLOC1S4Q9NUP1 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.73■■□□□ 1.55
BLOC1S4Q9NUP1 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
BLOC1S4Q9NUP1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 pRNA.6-201ENST00000610482 90 ntBASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 pRNA.5-201ENST00000612139 90 ntBASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 pRNA.11-201ENST00000618423 90 ntBASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 pRNA.13-201ENST00000619112 90 ntBASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
BLOC1S4Q9NUP1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 MIR3181-201ENST00000578512 73 ntBASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
BLOC1S4Q9NUP1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.55
BLOC1S4Q9NUP1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
BLOC1S4Q9NUP1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.7■■□□□ 1.55
BLOC1S4Q9NUP1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.7■■□□□ 1.54
BLOC1S4Q9NUP1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 AL136116.3-201ENST00000402907 1138 ntBASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 AC087742.1-201ENST00000575880 1738 ntBASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
BLOC1S4Q9NUP1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 AC233723.2-201ENST00000623798 2106 ntBASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC24.68■■□□□ 1.54
BLOC1S4Q9NUP1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 AC133637.1-201ENST00000624115 1537 ntBASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 SERBP1P1-201ENST00000396021 1160 ntBASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
BLOC1S4Q9NUP1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms