Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC005703.6-201ENST00000623265 1329 ntBASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC29.78■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 AC087623.3-201ENST00000607047 1098 ntBASIC29.77■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC29.77■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC29.77■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
SENP3-EIF4A1A0A087X0R7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC29.76■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 AC097381.1-201ENST00000429019 1296 ntBASIC29.76■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 MIR4466-201ENST00000606121 54 ntBASIC29.76■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC29.75■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC29.75■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC29.75■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 RASSF1-AS1-201ENST00000629828 790 ntBASIC29.75■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC29.75■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC29.74■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 AC009102.2-201ENST00000606772 1639 ntBASIC29.74■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC29.73■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC29.73■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC29.73■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 EP400NL-214ENST00000641289 2402 ntBASIC29.72■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 ID1-201ENST00000376105 1233 ntBASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
SENP3-EIF4A1A0A087X0R7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR3621-201ENST00000580529 85 ntBASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC29.68■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC29.68■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC29.68■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC29.68■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 AK3-203ENST00000447596 705 ntTSL 2 BASIC29.67■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 AC105265.2-201ENST00000467189 838 ntBASIC29.67■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SUDS3P1-201ENST00000505831 966 ntBASIC29.67■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC29.67■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms