Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
UBE3DQ7Z6J8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
UBE3DQ7Z6J8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
UBE3DQ7Z6J8 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
UBE3DQ7Z6J8 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
UBE3DQ7Z6J8 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
UBE3DQ7Z6J8 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
UBE3DQ7Z6J8 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
UBE3DQ7Z6J8 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.14■□□□□ 0.97
UBE3DQ7Z6J8 AC241377.3-202ENST00000626088 1088 ntBASIC21.14■□□□□ 0.97
UBE3DQ7Z6J8 AC241585.3-202ENST00000628937 1088 ntBASIC21.14■□□□□ 0.97
UBE3DQ7Z6J8 AC245100.8-202ENST00000629247 1058 ntBASIC21.14■□□□□ 0.97
UBE3DQ7Z6J8 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.14■□□□□ 0.97
UBE3DQ7Z6J8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 C1orf229-201ENST00000623686 2258 ntBASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.13■□□□□ 0.97
UBE3DQ7Z6J8 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 SRD5A1P1-201ENST00000442297 786 ntBASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3DQ7Z6J8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 AL499627.2-201ENST00000606283 725 ntBASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 AC009086.3-201ENST00000623486 1008 ntBASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3DQ7Z6J8 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3DQ7Z6J8 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
UBE3DQ7Z6J8 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.08■□□□□ 0.97
UBE3DQ7Z6J8 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
UBE3DQ7Z6J8 AC012676.1-201ENST00000574705 1949 ntBASIC21.08■□□□□ 0.97
UBE3DQ7Z6J8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
UBE3DQ7Z6J8 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
UBE3DQ7Z6J8 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
UBE3DQ7Z6J8 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
UBE3DQ7Z6J8 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.08■□□□□ 0.96
UBE3DQ7Z6J8 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
UBE3DQ7Z6J8 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.07■□□□□ 0.96
UBE3DQ7Z6J8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms