Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.84■■□□□ 1.41
FOXN3O00409 DUX4L4-201ENST00000566884 1269 ntBASIC23.84■■□□□ 1.41
FOXN3O00409 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
FOXN3O00409 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
FOXN3O00409 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
FOXN3O00409 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.83■■□□□ 1.41
FOXN3O00409 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXN3O00409 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXN3O00409 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXN3O00409 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
FOXN3O00409 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.83■■□□□ 1.41
FOXN3O00409 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXN3O00409 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXN3O00409 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXN3O00409 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
FOXN3O00409 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
FOXN3O00409 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.82■■□□□ 1.4
FOXN3O00409 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
FOXN3O00409 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.82■■□□□ 1.4
FOXN3O00409 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.82■■□□□ 1.4
FOXN3O00409 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
FOXN3O00409 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
FOXN3O00409 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.81■■□□□ 1.4
FOXN3O00409 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
FOXN3O00409 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
FOXN3O00409 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
FOXN3O00409 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
FOXN3O00409 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
FOXN3O00409 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.81■■□□□ 1.4
FOXN3O00409 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
FOXN3O00409 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
FOXN3O00409 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
FOXN3O00409 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
FOXN3O00409 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.8■■□□□ 1.4
FOXN3O00409 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.8■■□□□ 1.4
FOXN3O00409 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.8■■□□□ 1.4
FOXN3O00409 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
FOXN3O00409 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.8■■□□□ 1.4
FOXN3O00409 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
FOXN3O00409 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.8■■□□□ 1.4
FOXN3O00409 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
FOXN3O00409 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.8■■□□□ 1.4
FOXN3O00409 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.8■■□□□ 1.4
FOXN3O00409 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.8■■□□□ 1.4
FOXN3O00409 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
FOXN3O00409 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXN3O00409 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
FOXN3O00409 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
FOXN3O00409 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.79■■□□□ 1.4
FOXN3O00409 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
FOXN3O00409 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXN3O00409 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
FOXN3O00409 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
FOXN3O00409 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXN3O00409 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXN3O00409 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
FOXN3O00409 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXN3O00409 GUSBP5-202ENST00000510805 1989 ntBASIC23.78■■□□□ 1.4
FOXN3O00409 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
FOXN3O00409 EP400NL-214ENST00000641289 2402 ntBASIC23.78■■□□□ 1.4
FOXN3O00409 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.78■■□□□ 1.4
FOXN3O00409 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.78■■□□□ 1.4
FOXN3O00409 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
FOXN3O00409 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.78■■□□□ 1.4
FOXN3O00409 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
FOXN3O00409 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
FOXN3O00409 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
FOXN3O00409 AC079834.2-201ENST00000609776 1949 ntBASIC23.78■■□□□ 1.4
FOXN3O00409 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
FOXN3O00409 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
FOXN3O00409 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC23.77■■□□□ 1.4
FOXN3O00409 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
FOXN3O00409 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.77■■□□□ 1.4
FOXN3O00409 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.77■■□□□ 1.4
FOXN3O00409 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
FOXN3O00409 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
FOXN3O00409 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
FOXN3O00409 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
FOXN3O00409 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.77■■□□□ 1.4
FOXN3O00409 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
FOXN3O00409 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.77■■□□□ 1.4
FOXN3O00409 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 ESRRAP2-201ENST00000418437 1549 ntBASIC23.76■■□□□ 1.39
FOXN3O00409 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
FOXN3O00409 AL117332.1-201ENST00000622628 974 ntBASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms