Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
NKX6-3A6NJ46 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
NKX6-3A6NJ46 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
NKX6-3A6NJ46 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 MIR4466-201ENST00000606121 54 ntBASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.64■□□□□ 0.57
NKX6-3A6NJ46 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 DUSP8P5-201ENST00000422884 1815 ntBASIC18.63■□□□□ 0.57
NKX6-3A6NJ46 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 DUX4L4-201ENST00000566884 1269 ntBASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 AC099791.2-201ENST00000605725 427 ntBASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 AL353803.4-201ENST00000565882 1934 ntBASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX6-3A6NJ46 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 DUX4L19-201ENST00000557448 1267 ntBASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX6-3A6NJ46 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NKX6-3A6NJ46 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX6-3A6NJ46 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
NKX6-3A6NJ46 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.58■□□□□ 0.57
NKX6-3A6NJ46 DUSP8P3-201ENST00000399571 1760 ntBASIC18.58■□□□□ 0.57
NKX6-3A6NJ46 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.58■□□□□ 0.57
NKX6-3A6NJ46 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX6-3A6NJ46 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
NKX6-3A6NJ46 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX6-3A6NJ46 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
NKX6-3A6NJ46 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
NKX6-3A6NJ46 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.58■□□□□ 0.56
NKX6-3A6NJ46 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
NKX6-3A6NJ46 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX6-3A6NJ46 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.58■□□□□ 0.56
NKX6-3A6NJ46 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms