Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 ESRRAP2-201ENST00000418437 1549 ntBASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZNF540Q8NDQ6 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 YBX1P4-201ENST00000392794 808 ntBASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZNF540Q8NDQ6 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 AL161729.1-201ENST00000604104 1402 ntBASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF540Q8NDQ6 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF540Q8NDQ6 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
ZNF540Q8NDQ6 SPCS2P3-201ENST00000500401 656 ntBASIC20.52■□□□□ 0.88
ZNF540Q8NDQ6 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF540Q8NDQ6 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF540Q8NDQ6 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF540Q8NDQ6 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF540Q8NDQ6 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.52■□□□□ 0.87
ZNF540Q8NDQ6 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 KRT18P10-201ENST00000388836 1287 ntBASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 AC010980.1-201ENST00000587192 1142 ntBASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.51■□□□□ 0.87
ZNF540Q8NDQ6 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF540Q8NDQ6 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 182.9 ms