Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MMP28Q9H239 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MMP28Q9H239 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
MMP28Q9H239 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.65■□□□□ 0.74
MMP28Q9H239 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MMP28Q9H239 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
MMP28Q9H239 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
MMP28Q9H239 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MMP28Q9H239 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MMP28Q9H239 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
MMP28Q9H239 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MMP28Q9H239 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MMP28Q9H239 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MMP28Q9H239 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MMP28Q9H239 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
MMP28Q9H239 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MMP28Q9H239 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
MMP28Q9H239 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MMP28Q9H239 AC092667.1-201ENST00000434301 2586 ntBASIC19.63■□□□□ 0.73
MMP28Q9H239 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.63■□□□□ 0.73
MMP28Q9H239 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP28Q9H239 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP28Q9H239 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MMP28Q9H239 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP28Q9H239 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP28Q9H239 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.63■□□□□ 0.73
MMP28Q9H239 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP28Q9H239 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MMP28Q9H239 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
MMP28Q9H239 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP28Q9H239 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
MMP28Q9H239 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MMP28Q9H239 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MMP28Q9H239 AC009831.1-201ENST00000580420 1582 ntBASIC19.62■□□□□ 0.73
MMP28Q9H239 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MMP28Q9H239 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP28Q9H239 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP28Q9H239 AC133552.2-201ENST00000619106 1032 ntBASIC19.62■□□□□ 0.73
MMP28Q9H239 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
MMP28Q9H239 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.62■□□□□ 0.73
MMP28Q9H239 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP28Q9H239 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.62■□□□□ 0.73
MMP28Q9H239 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MMP28Q9H239 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP28Q9H239 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
MMP28Q9H239 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.61■□□□□ 0.73
MMP28Q9H239 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.61■□□□□ 0.73
MMP28Q9H239 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP28Q9H239 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP28Q9H239 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
MMP28Q9H239 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP28Q9H239 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
MMP28Q9H239 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
MMP28Q9H239 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP28Q9H239 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.6■□□□□ 0.73
MMP28Q9H239 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MMP28Q9H239 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP28Q9H239 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.6■□□□□ 0.73
MMP28Q9H239 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.6■□□□□ 0.73
MMP28Q9H239 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP28Q9H239 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP28Q9H239 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
MMP28Q9H239 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
MMP28Q9H239 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MMP28Q9H239 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MMP28Q9H239 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP28Q9H239 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.58■□□□□ 0.73
MMP28Q9H239 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
MMP28Q9H239 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.58■□□□□ 0.72
MMP28Q9H239 U85056.1-201ENST00000616429 682 ntBASIC19.58■□□□□ 0.72
MMP28Q9H239 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
MMP28Q9H239 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MMP28Q9H239 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MMP28Q9H239 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.58■□□□□ 0.72
MMP28Q9H239 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.58■□□□□ 0.72
MMP28Q9H239 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.58■□□□□ 0.72
MMP28Q9H239 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
MMP28Q9H239 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms