Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RAD51D-202ENST00000345365 9988 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.553e-11■■■■■ 36.5
YBX3P16989 LINC01029-203ENST00000582805 788 ntTSL 1 (best)20.1■□□□□ 0.819e-8■■■■■ 36.5
YBX3P16989 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.89■■□□□ 1.732e-7■■■■■ 36.5
YBX3P16989 C22orf34-202ENST00000400023 1469 ntTSL 1 (best)20.23■□□□□ 0.832e-7■■■■■ 36.5
YBX3P16989 PHC2-210ENST00000485928 2548 ntTSL 223.24■■□□□ 1.319e-7■■■■■ 36.4
YBX3P16989 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.269e-7■■■■■ 36.4
YBX3P16989 PHC2-203ENST00000373422 2799 ntTSL 2 BASIC13.27□□□□□ -0.289e-7■■■■■ 36.4
YBX3P16989 PHC2-201ENST00000257118 3870 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.439e-7■■■■■ 36.4
YBX3P16989 PHC2-204ENST00000431992 3789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.619e-7■■■■■ 36.4
YBX3P16989 HACD3-207ENST00000566074 1658 ntTSL 5 BASIC15.4■□□□□ 0.061e-7■■■■■ 36.2
YBX3P16989 TNS1-215ENST00000480416 335 ntTSL 25.11□□□□□ -1.591e-11■■■■■ 36.1
YBX3P16989 MGRN1-214ENST00000591673 568 ntTSL 417.6■□□□□ 0.415e-9■■■■■ 36.1
YBX3P16989 RPL31-211ENST00000456292 357 ntTSL 26.42□□□□□ -1.382e-9■■■■■ 35.9
YBX3P16989 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.023e-9■■■■■ 35.9
YBX3P16989 CIAO1-201ENST00000272402 3588 ntTSL 212.73□□□□□ -0.373e-9■■■■■ 35.9
YBX3P16989 MARCH7-204ENST00000420397 983 ntTSL 58.55□□□□□ -1.041e-11■■■■■ 35.6
YBX3P16989 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.193e-7■■■■■ 35.3
YBX3P16989 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.482e-11■■■■■ 35.1
YBX3P16989 IKZF4-201ENST00000262032 5229 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.462e-11■■■■■ 35.1
YBX3P16989 IKZF4-202ENST00000431367 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.582e-11■■■■■ 35.1
YBX3P16989 IKZF4-210ENST00000551103 3683 ntTSL 210.13□□□□□ -0.792e-11■■■■■ 35.1
YBX3P16989 IKZF4-211ENST00000551124 4396 ntTSL 1 (best)9.96□□□□□ -0.822e-11■■■■■ 35.1
YBX3P16989 THAP12-204ENST00000529901 6795 ntTSL 1 (best)5.15□□□□□ -1.592e-11■■■■■ 35.1
YBX3P16989 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.7□□□□□ -1.51e-7■■■■■ 35.1
YBX3P16989 DOPEY2-202ENST00000399151 7685 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.775e-12■■■■■ 35
YBX3P16989 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.92■■□□□ 1.742e-7■■■■■ 35
YBX3P16989 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20.53■□□□□ 0.882e-7■■■■■ 35
YBX3P16989 HACD3-210ENST00000568793 1824 ntTSL 5 BASIC14.92□□□□□ -0.021e-7■■■■■ 34.9
YBX3P16989 HDLBP-210ENST00000423693 544 ntTSL 516.39■□□□□ 0.213e-12■■■■■ 34.7
YBX3P16989 HDLBP-205ENST00000413241 581 ntTSL 513.79□□□□□ -0.23e-12■■■■■ 34.7
YBX3P16989 ABCC1-206ENST00000574761 996 ntTSL 216.31■□□□□ 0.21e-8■■■■■ 34.3
YBX3P16989 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.011e-7■■■■■ 34.3
YBX3P16989 GPT2-202ENST00000440783 4228 ntTSL 2 BASIC12.66□□□□□ -0.381e-7■■■■■ 34.3
YBX3P16989 HACD3-201ENST00000261875 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.121e-7■■■■■ 34.2
YBX3P16989 MRPL21-203ENST00000536637 557 ntTSL 216.29■□□□□ 0.24e-8■■■■■ 34
YBX3P16989 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.633e-13■■■■■ 34
YBX3P16989 MED30-203ENST00000519879 545 ntTSL 214.04□□□□□ -0.163e-13■■■■■ 34
YBX3P16989 BRD7-201ENST00000394688 5370 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.668e-7■■■■■ 33.9
YBX3P16989 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC8.15□□□□□ -1.118e-7■■■■■ 33.9
YBX3P16989 RAB3GAP2-201ENST00000237724 821 ntTSL 321.99■■□□□ 1.113e-8■■■■■ 33.8
YBX3P16989 RAB3GAP2-204ENST00000474178 539 ntTSL 414.57□□□□□ -0.083e-8■■■■■ 33.8
YBX3P16989 ZNF212-202ENST00000462724 860 ntTSL 532.01■■■□□ 2.718e-10■■■■■ 33.7
YBX3P16989 ZNF212-204ENST00000486371 637 ntTSL 329.45■■■□□ 2.318e-10■■■■■ 33.7
YBX3P16989 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.088e-10■■■■■ 33.7
YBX3P16989 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC7.51□□□□□ -1.212e-7■■■■■ 33.6
YBX3P16989 C22orf34-205ENST00000416411 542 ntTSL 417.44■□□□□ 0.383e-7■■■■■ 33.6
YBX3P16989 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.57□□□□□ -0.083e-7■■■■■ 33.6
YBX3P16989 FUCA2-203ENST00000451668 737 ntTSL 210.09□□□□□ -0.799e-12■■■■■ 33.5
YBX3P16989 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.159e-10■■■■■ 33.5
YBX3P16989 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC13.82□□□□□ -0.29e-10■■■■■ 33.5
YBX3P16989 MCFD2-207ENST00000409913 3975 ntTSL 1 (best) BASIC11.21□□□□□ -0.619e-10■■■■■ 33.5
YBX3P16989 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.289e-10■■■■■ 33.5
YBX3P16989 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.66□□□□□ -1.349e-10■■■■■ 33.5
YBX3P16989 TNS1-217ENST00000490566 1652 ntTSL 211.35□□□□□ -0.594e-7■■■■■ 33.4
YBX3P16989 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.12■■□□□ 1.135e-7■■■■■ 33.3
YBX3P16989 ADARB1-203ENST00000389861 5031 ntTSL 1 (best)22.12■■□□□ 1.135e-7■■■■■ 33.3
YBX3P16989 ADARB1-212ENST00000496664 5033 ntTSL 1 (best)22.12■■□□□ 1.135e-7■■■■■ 33.3
YBX3P16989 ADARB1-211ENST00000492414 4913 ntTSL 1 (best)21.17■□□□□ 0.985e-7■■■■■ 33.3
YBX3P16989 ADARB1-206ENST00000449478 704 ntTSL 520.71■□□□□ 0.915e-7■■■■■ 33.3
YBX3P16989 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.595e-7■■■■■ 33.3
YBX3P16989 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.26■□□□□ 0.515e-7■■■■■ 33.3
YBX3P16989 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC13.26□□□□□ -0.295e-7■■■■■ 33.3
YBX3P16989 ADARB1-209ENST00000464215 389 ntTSL 39.64□□□□□ -0.875e-7■■■■■ 33.3
YBX3P16989 SAP30BP-224ENST00000584557 2000 nt22.53■■□□□ 1.22e-7■■■■■ 33.2
YBX3P16989 SAP30BP-207ENST00000578756 652 ntTSL 218.07■□□□□ 0.482e-7■■■■■ 33.2
YBX3P16989 SAP30BP-209ENST00000579005 462 ntTSL 318.07■□□□□ 0.482e-7■■■■■ 33.2
YBX3P16989 RPL31-209ENST00000419276 781 ntTSL 56.42□□□□□ -1.382e-8■■■■■ 33.2
YBX3P16989 AC012618.2-201ENST00000428058 849 ntBASIC26.37■■□□□ 1.811e-8■■■■■ 33.1
YBX3P16989 MARCH6-214ENST00000606497 1334 ntTSL 49.22□□□□□ -0.936e-14■■■■■ 33.1
YBX3P16989 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC22.41■■□□□ 1.182e-7■■■■■ 33
YBX3P16989 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.932e-7■■■■■ 33
YBX3P16989 KLHL20-201ENST00000209884 3421 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.611e-10■■■■■ 32.9
YBX3P16989 CPNE7-203ENST00000525982 576 ntTSL 528.75■■■□□ 2.192e-7■■■■■ 32.9
YBX3P16989 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.092e-7■■■■■ 32.9
YBX3P16989 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.81■□□□□ 0.762e-7■■■■■ 32.9
YBX3P16989 ANXA2-220ENST00000559370 521 ntTSL 411.43□□□□□ -0.581e-16■■■■■ 32.9
YBX3P16989 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.64■■□□□ 1.066e-9■■■■■ 32.8
YBX3P16989 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.936e-9■■■■■ 32.8
YBX3P16989 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.96e-9■■■■■ 32.8
YBX3P16989 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.866e-9■■■■■ 32.8
YBX3P16989 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.2■□□□□ 0.826e-9■■■■■ 32.8
YBX3P16989 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.696e-9■■■■■ 32.8
YBX3P16989 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.666e-9■■■■■ 32.8
YBX3P16989 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.156e-9■■■■■ 32.8
YBX3P16989 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC19.51■□□□□ 0.711e-6■■■■■ 32.7
YBX3P16989 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC19.51■□□□□ 0.711e-6■■■■■ 32.7
YBX3P16989 MEF2C-207ENST00000503554 1345 ntTSL 5 BASIC16.08■□□□□ 0.161e-6■■■■■ 32.7
YBX3P16989 MEF2C-230ENST00000627717 815 ntTSL 513.6□□□□□ -0.231e-6■■■■■ 32.7
YBX3P16989 MEF2C-213ENST00000508569 1882 ntTSL 5 BASIC13.29□□□□□ -0.281e-6■■■■■ 32.7
YBX3P16989 MEF2C-228ENST00000627170 722 ntTSL 512.81□□□□□ -0.361e-6■■■■■ 32.7
YBX3P16989 MEF2C-203ENST00000437473 4340 ntTSL 1 (best) BASIC11.51□□□□□ -0.571e-6■■■■■ 32.7
YBX3P16989 MEF2C-238ENST00000636143 2247 ntTSL 510.92□□□□□ -0.661e-6■■■■■ 32.7
YBX3P16989 MEF2C-221ENST00000514015 2772 ntTSL 5 BASIC10.63□□□□□ -0.711e-6■■■■■ 32.7
YBX3P16989 MEF2C-239ENST00000636294 2576 ntTSL 5 BASIC10.17□□□□□ -0.781e-6■■■■■ 32.7
YBX3P16989 MEF2C-209ENST00000504921 7561 ntTSL 1 (best) BASIC10.03□□□□□ -0.81e-6■■■■■ 32.7
YBX3P16989 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC9.83□□□□□ -0.841e-6■■■■■ 32.7
YBX3P16989 MEF2C-229ENST00000627659 2393 ntTSL 5 BASIC9.18□□□□□ -0.941e-6■■■■■ 32.7
YBX3P16989 MEF2C-222ENST00000514028 3393 ntTSL 5 BASIC8.67□□□□□ -1.021e-6■■■■■ 32.7
YBX3P16989 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC8.51□□□□□ -1.051e-6■■■■■ 32.7
YBX3P16989 MEF2C-218ENST00000510980 527 ntTSL 28.48□□□□□ -1.051e-6■■■■■ 32.7
Retrieved 100 of 29,075 protein–RNA pairs in 605 ms