Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
COL17A1Q9UMD9 DBI-210ENST00000542275 757 ntTSL 5 BASIC34.86■■■■□ 3.17
COL17A1Q9UMD9 MIR4651-201ENST00000582622 73 ntBASIC34.86■■■■□ 3.17
COL17A1Q9UMD9 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC34.86■■■■□ 3.17
COL17A1Q9UMD9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC34.86■■■■□ 3.17
COL17A1Q9UMD9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC34.85■■■■□ 3.17
COL17A1Q9UMD9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC34.85■■■■□ 3.17
COL17A1Q9UMD9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC34.85■■■■□ 3.17
COL17A1Q9UMD9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
COL17A1Q9UMD9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC34.85■■■■□ 3.17
COL17A1Q9UMD9 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC34.85■■■■□ 3.17
COL17A1Q9UMD9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 NT5C3AP1-201ENST00000394500 1012 ntBASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 DET1-205ENST00000558413 583 ntTSL 4 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 WT1-AS_3.1-201ENST00000613262 234 ntBASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC34.84■■■■□ 3.17
COL17A1Q9UMD9 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
COL17A1Q9UMD9 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
COL17A1Q9UMD9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC34.83■■■■□ 3.17
COL17A1Q9UMD9 MIR663A-201ENST00000385250 93 ntBASIC34.83■■■■□ 3.17
COL17A1Q9UMD9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC34.83■■■■□ 3.17
COL17A1Q9UMD9 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC34.83■■■■□ 3.17
COL17A1Q9UMD9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC34.83■■■■□ 3.17
COL17A1Q9UMD9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
COL17A1Q9UMD9 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
COL17A1Q9UMD9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
COL17A1Q9UMD9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC34.82■■■■□ 3.16
COL17A1Q9UMD9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC34.82■■■■□ 3.16
COL17A1Q9UMD9 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
COL17A1Q9UMD9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC34.81■■■■□ 3.16
COL17A1Q9UMD9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
COL17A1Q9UMD9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC34.81■■■■□ 3.16
COL17A1Q9UMD9 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC34.81■■■■□ 3.16
COL17A1Q9UMD9 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC34.81■■■■□ 3.16
COL17A1Q9UMD9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
COL17A1Q9UMD9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC34.81■■■■□ 3.16
COL17A1Q9UMD9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 BID-214ENST00000617586 542 ntTSL 5 BASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
COL17A1Q9UMD9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC34.79■■■■□ 3.16
COL17A1Q9UMD9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
COL17A1Q9UMD9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC34.79■■■■□ 3.16
COL17A1Q9UMD9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC34.79■■■■□ 3.16
COL17A1Q9UMD9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
COL17A1Q9UMD9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC34.79■■■■□ 3.16
COL17A1Q9UMD9 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC34.79■■■■□ 3.16
COL17A1Q9UMD9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC34.79■■■■□ 3.16
COL17A1Q9UMD9 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 ARL16-209ENST00000573715 763 ntTSL 3 BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 ARL16-211ENST00000576135 694 ntTSL 3 BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC34.78■■■■□ 3.16
COL17A1Q9UMD9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC34.77■■■■□ 3.16
COL17A1Q9UMD9 KRT18P6-201ENST00000555540 1265 ntBASIC34.77■■■■□ 3.16
COL17A1Q9UMD9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC34.77■■■■□ 3.16
COL17A1Q9UMD9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC34.77■■■■□ 3.16
COL17A1Q9UMD9 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC34.76■■■■□ 3.16
COL17A1Q9UMD9 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
COL17A1Q9UMD9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
COL17A1Q9UMD9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
COL17A1Q9UMD9 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC34.75■■■■□ 3.15
COL17A1Q9UMD9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC34.75■■■■□ 3.15
COL17A1Q9UMD9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
COL17A1Q9UMD9 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC34.75■■■■□ 3.15
COL17A1Q9UMD9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
COL17A1Q9UMD9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC34.74■■■■□ 3.15
COL17A1Q9UMD9 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
COL17A1Q9UMD9 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC34.74■■■■□ 3.15
COL17A1Q9UMD9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC34.74■■■■□ 3.15
COL17A1Q9UMD9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC34.74■■■■□ 3.15
COL17A1Q9UMD9 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC34.74■■■■□ 3.15
COL17A1Q9UMD9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC34.73■■■■□ 3.15
COL17A1Q9UMD9 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC34.73■■■■□ 3.15
COL17A1Q9UMD9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC34.73■■■■□ 3.15
COL17A1Q9UMD9 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC34.73■■■■□ 3.15
COL17A1Q9UMD9 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC34.73■■■■□ 3.15
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms