Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
BLOC1S4Q9NUP1 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
BLOC1S4Q9NUP1 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC25.26■■□□□ 1.63
BLOC1S4Q9NUP1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
BLOC1S4Q9NUP1 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
BLOC1S4Q9NUP1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
BLOC1S4Q9NUP1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.22■■□□□ 1.63
BLOC1S4Q9NUP1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 AC079630.1-202ENST00000618127 1840 ntBASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
BLOC1S4Q9NUP1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.63
BLOC1S4Q9NUP1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.62
BLOC1S4Q9NUP1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
BLOC1S4Q9NUP1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
BLOC1S4Q9NUP1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.2■■□□□ 1.62
BLOC1S4Q9NUP1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.2■■□□□ 1.62
BLOC1S4Q9NUP1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
BLOC1S4Q9NUP1 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 KRT16P3-201ENST00000439127 1283 ntBASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 MIR6724-1-201ENST00000616420 92 ntBASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 MIR6724-2-201ENST00000616483 92 ntBASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 MIR6724-4-201ENST00000617390 92 ntBASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 MIR6724-3-201ENST00000622482 92 ntBASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
BLOC1S4Q9NUP1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 DUSP8P3-201ENST00000399571 1760 ntBASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
BLOC1S4Q9NUP1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms