Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRRC53A6NM62 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRRC53A6NM62 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC24.38■■□□□ 1.49
LRRC53A6NM62 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
LRRC53A6NM62 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.38■■□□□ 1.49
LRRC53A6NM62 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
LRRC53A6NM62 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRRC53A6NM62 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
LRRC53A6NM62 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC53A6NM62 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
LRRC53A6NM62 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC53A6NM62 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC53A6NM62 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
LRRC53A6NM62 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC53A6NM62 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
LRRC53A6NM62 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC53A6NM62 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC53A6NM62 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.37■■□□□ 1.49
LRRC53A6NM62 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC53A6NM62 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC53A6NM62 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC53A6NM62 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC53A6NM62 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC53A6NM62 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
LRRC53A6NM62 TERT-206ENST00000508104 2486 ntTSL 5 BASIC24.36■■□□□ 1.49
LRRC53A6NM62 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC53A6NM62 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.36■■□□□ 1.49
LRRC53A6NM62 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.36■■□□□ 1.49
LRRC53A6NM62 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC53A6NM62 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC53A6NM62 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.36■■□□□ 1.49
LRRC53A6NM62 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.36■■□□□ 1.49
LRRC53A6NM62 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC53A6NM62 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.35■■□□□ 1.49
LRRC53A6NM62 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
LRRC53A6NM62 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC53A6NM62 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC53A6NM62 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC53A6NM62 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC53A6NM62 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC53A6NM62 GUK1-208ENST00000366728 842 ntTSL 2 BASIC24.35■■□□□ 1.49
LRRC53A6NM62 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
LRRC53A6NM62 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.35■■□□□ 1.49
LRRC53A6NM62 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.35■■□□□ 1.49
LRRC53A6NM62 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
LRRC53A6NM62 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC53A6NM62 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC53A6NM62 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC53A6NM62 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24.34■■□□□ 1.49
LRRC53A6NM62 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.34■■□□□ 1.49
LRRC53A6NM62 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC24.34■■□□□ 1.49
LRRC53A6NM62 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
LRRC53A6NM62 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
LRRC53A6NM62 AC079630.1-202ENST00000618127 1840 ntBASIC24.34■■□□□ 1.49
LRRC53A6NM62 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
LRRC53A6NM62 AC004448.1-201ENST00000458332 883 ntBASIC24.34■■□□□ 1.49
LRRC53A6NM62 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
LRRC53A6NM62 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.34■■□□□ 1.49
LRRC53A6NM62 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC24.34■■□□□ 1.49
LRRC53A6NM62 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC24.34■■□□□ 1.49
LRRC53A6NM62 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.33■■□□□ 1.49
LRRC53A6NM62 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.33■■□□□ 1.49
LRRC53A6NM62 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.33■■□□□ 1.49
LRRC53A6NM62 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC24.33■■□□□ 1.49
LRRC53A6NM62 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.33■■□□□ 1.49
LRRC53A6NM62 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
LRRC53A6NM62 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
LRRC53A6NM62 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
LRRC53A6NM62 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
LRRC53A6NM62 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
LRRC53A6NM62 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
LRRC53A6NM62 EP400NL-214ENST00000641289 2402 ntBASIC24.32■■□□□ 1.48
LRRC53A6NM62 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.32■■□□□ 1.48
LRRC53A6NM62 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.32■■□□□ 1.48
LRRC53A6NM62 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
LRRC53A6NM62 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC24.32■■□□□ 1.48
LRRC53A6NM62 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
LRRC53A6NM62 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.31■■□□□ 1.48
LRRC53A6NM62 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC53A6NM62 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC53A6NM62 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.31■■□□□ 1.48
LRRC53A6NM62 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
LRRC53A6NM62 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC53A6NM62 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC53A6NM62 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC53A6NM62 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC53A6NM62 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC53A6NM62 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC53A6NM62 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC53A6NM62 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC24.3■■□□□ 1.48
LRRC53A6NM62 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC53A6NM62 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC53A6NM62 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
LRRC53A6NM62 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC53A6NM62 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC53A6NM62 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC53A6NM62 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
LRRC53A6NM62 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRRC53A6NM62 MIR4508-201ENST00000584178 70 ntBASIC24.29■■□□□ 1.48
LRRC53A6NM62 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms