Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.94■□□□□ 0.782e-6■□□□□ 8.5
YBX3P16989 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.94■□□□□ 0.782e-6■□□□□ 8.5
YBX3P16989 YIF1A-208ENST00000485820 653 ntTSL 219.71■□□□□ 0.753e-12■□□□□ 8.5
YBX3P16989 RHNO1-207ENST00000538636 583 ntTSL 419.55■□□□□ 0.722e-6■□□□□ 8.5
YBX3P16989 PPP2R1A-210ENST00000490868 668 ntTSL 218.87■□□□□ 0.611e-9■□□□□ 8.5
YBX3P16989 TBC1D9B-217ENST00000522472 668 ntTSL 518.28■□□□□ 0.522e-6■□□□□ 8.5
YBX3P16989 NMT1-203ENST00000585561 807 ntTSL 318■□□□□ 0.473e-8■□□□□ 8.5
YBX3P16989 NMT1-209ENST00000590114 666 ntTSL 318■□□□□ 0.473e-8■□□□□ 8.5
YBX3P16989 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.422e-6■□□□□ 8.5
YBX3P16989 MBOAT7-209ENST00000464098 493 ntTSL 217.64■□□□□ 0.413e-8■□□□□ 8.5
YBX3P16989 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.352e-6■□□□□ 8.5
YBX3P16989 TMBIM4-211ENST00000545504 409 ntTSL 317.21■□□□□ 0.352e-6■□□□□ 8.5
YBX3P16989 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.322e-6■□□□□ 8.5
YBX3P16989 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.87■□□□□ 0.292e-6■□□□□ 8.5
YBX3P16989 TBC1D9B-212ENST00000521469 2741 ntTSL 1 (best)16.83■□□□□ 0.292e-6■□□□□ 8.5
YBX3P16989 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.262e-6■□□□□ 8.5
YBX3P16989 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.242e-6■□□□□ 8.5
YBX3P16989 EBNA1BP2-209ENST00000491223 680 ntTSL 216.52■□□□□ 0.243e-8■□□□□ 8.5
YBX3P16989 MBOAT7-208ENST00000453320 557 ntTSL 416.44■□□□□ 0.223e-8■□□□□ 8.5
YBX3P16989 CALM1-214ENST00000557020 557 ntTSL 416.33■□□□□ 0.22e-6■□□□□ 8.5
YBX3P16989 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.192e-6■□□□□ 8.5
YBX3P16989 PPP2R1A-206ENST00000468280 688 ntTSL 216.11■□□□□ 0.171e-9■□□□□ 8.5
YBX3P16989 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.152e-6■□□□□ 8.5
YBX3P16989 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.112e-6■□□□□ 8.5
YBX3P16989 TBC1D9B-210ENST00000520794 2958 ntTSL 215.67■□□□□ 0.12e-6■□□□□ 8.5
YBX3P16989 ACSS2-220ENST00000491533 933 ntTSL 515.55■□□□□ 0.082e-6■□□□□ 8.5
YBX3P16989 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.062e-6■□□□□ 8.5
YBX3P16989 PPP2R1A-207ENST00000473455 615 ntTSL 315.41■□□□□ 0.061e-9■□□□□ 8.5
YBX3P16989 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.072e-6■□□□□ 8.5
YBX3P16989 COA1-208ENST00000431651 720 ntAPPRIS ALT2 TSL 314.6□□□□□ -0.075e-8■□□□□ 8.5
YBX3P16989 CBLL1-203ENST00000420796 1506 ntTSL 514.46□□□□□ -0.13e-8■□□□□ 8.5
YBX3P16989 JADE1-210ENST00000511925 529 ntTSL 414.26□□□□□ -0.132e-6■□□□□ 8.5
YBX3P16989 PTBP3-206ENST00000450374 368 ntTSL 514.2□□□□□ -0.142e-6■□□□□ 8.5
YBX3P16989 EBNA1BP2-202ENST00000431635 1503 ntTSL 2 BASIC14.12□□□□□ -0.153e-8■□□□□ 8.5
YBX3P16989 JADE1-205ENST00000504089 567 ntTSL 414.1□□□□□ -0.152e-6■□□□□ 8.5
YBX3P16989 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.98□□□□□ -0.172e-6■□□□□ 8.5
YBX3P16989 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.182e-6■□□□□ 8.5
YBX3P16989 BCKDHA-207ENST00000544905 562 ntTSL 213.85□□□□□ -0.192e-6■□□□□ 8.5
YBX3P16989 MAP4K4-217ENST00000496989 574 ntTSL 413.43□□□□□ -0.262e-6■□□□□ 8.5
YBX3P16989 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.272e-6■□□□□ 8.5
YBX3P16989 POLR2C-202ENST00000562599 748 ntTSL 513.21□□□□□ -0.292e-6■□□□□ 8.5
YBX3P16989 JADE1-211ENST00000512960 3000 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.32e-6■□□□□ 8.5
YBX3P16989 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.322e-6■□□□□ 8.5
YBX3P16989 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.322e-6■□□□□ 8.5
YBX3P16989 COA1-205ENST00000415798 524 ntAPPRIS ALT2 TSL 412.99□□□□□ -0.335e-8■□□□□ 8.5
YBX3P16989 ASXL1-204ENST00000470145 1073 ntTSL 512.89□□□□□ -0.352e-6■□□□□ 8.5
YBX3P16989 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.352e-6■□□□□ 8.5
YBX3P16989 C15orf39-201ENST00000360639 4517 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.42e-6■□□□□ 8.5
YBX3P16989 JADE1-201ENST00000226319 5772 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.422e-6■□□□□ 8.5
YBX3P16989 EBNA1BP2-201ENST00000236051 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.443e-8■□□□□ 8.5
YBX3P16989 JADE1-207ENST00000508997 504 ntTSL 312.28□□□□□ -0.442e-6■□□□□ 8.5
YBX3P16989 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.452e-6■□□□□ 8.5
YBX3P16989 PPP2R1A-211ENST00000495876 562 ntTSL 411.99□□□□□ -0.491e-9■□□□□ 8.5
YBX3P16989 WDR26-207ENST00000480676 1725 ntTSL 511.94□□□□□ -0.52e-6■□□□□ 8.5
YBX3P16989 JADE1-213ENST00000610919 5644 ntAPPRIS P3 TSL 5 BASIC11.65□□□□□ -0.542e-6■□□□□ 8.5
YBX3P16989 POLR2C-206ENST00000564626 518 ntTSL 211.39□□□□□ -0.592e-6■□□□□ 8.5
YBX3P16989 TBC1D9B-204ENST00000518085 3838 ntTSL 1 (best)11.39□□□□□ -0.592e-6■□□□□ 8.5
YBX3P16989 CBLL1-205ENST00000440859 4432 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.63e-8■□□□□ 8.5
YBX3P16989 KIF18B-202ENST00000587309 4217 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.672e-6■□□□□ 8.5
YBX3P16989 JADE1-214ENST00000611140 5648 ntAPPRIS P3 TSL 5 BASIC10.5□□□□□ -0.732e-6■□□□□ 8.5
YBX3P16989 SF3B3-212ENST00000568539 555 ntTSL 210.38□□□□□ -0.752e-6■□□□□ 8.5
YBX3P16989 TBC1D13-201ENST00000223865 3378 ntTSL 2 BASIC10.33□□□□□ -0.762e-6■□□□□ 8.5
YBX3P16989 EBNA1BP2-203ENST00000461557 741 ntTSL 510.2□□□□□ -0.783e-8■□□□□ 8.5
YBX3P16989 JADE1-202ENST00000413543 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.892e-6■□□□□ 8.5
YBX3P16989 DCAF6-210ENST00000478668 494 ntTSL 29.47□□□□□ -0.893e-8■□□□□ 8.5
YBX3P16989 UBE4B-209ENST00000487244 818 ntTSL 1 (best)9.39□□□□□ -0.912e-6■□□□□ 8.5
YBX3P16989 PLEKHA2-205ENST00000521382 338 ntTSL 39.37□□□□□ -0.912e-6■□□□□ 8.5
YBX3P16989 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC9.3□□□□□ -0.922e-6■□□□□ 8.5
YBX3P16989 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.032e-6■□□□□ 8.5
YBX3P16989 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC8.23□□□□□ -1.092e-6■□□□□ 8.5
YBX3P16989 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC7.99□□□□□ -1.132e-6■□□□□ 8.5
YBX3P16989 TMBIM4-207ENST00000542072 220 ntTSL 37.97□□□□□ -1.132e-6■□□□□ 8.5
YBX3P16989 ACTL6A-204ENST00000461125 457 ntTSL 27.96□□□□□ -1.142e-6■□□□□ 8.5
YBX3P16989 CBLL1-204ENST00000432748 573 ntTSL 27.85□□□□□ -1.153e-8■□□□□ 8.5
YBX3P16989 RHNO1-208ENST00000538700 580 ntTSL 47.59□□□□□ -1.192e-6■□□□□ 8.5
YBX3P16989 BIRC6-212ENST00000497023 578 ntTSL 47.32□□□□□ -1.242e-9■□□□□ 8.5
YBX3P16989 PCM1-205ENST00000517836 580 ntTSL 37.16□□□□□ -1.262e-6■□□□□ 8.5
YBX3P16989 TMBIM4-204ENST00000534930 571 ntTSL 57.14□□□□□ -1.272e-6■□□□□ 8.5
YBX3P16989 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.61□□□□□ -1.352e-6■□□□□ 8.5
YBX3P16989 MCTS1-206ENST00000493274 732 ntTSL 36.6□□□□□ -1.352e-6■□□□□ 8.5
YBX3P16989 MCTS1-207ENST00000493879 619 ntTSL 26.52□□□□□ -1.372e-6■□□□□ 8.5
YBX3P16989 VIRMA-207ENST00000522263 3219 ntTSL 1 (best)6.52□□□□□ -1.372e-6■□□□□ 8.5
YBX3P16989 DAD1-202ENST00000489532 339 ntTSL 36.47□□□□□ -1.375e-8■□□□□ 8.5
YBX3P16989 RHNO1-206ENST00000536063 516 ntTSL 36.24□□□□□ -1.412e-6■□□□□ 8.5
YBX3P16989 MAP4K4-215ENST00000489490 362 ntTSL 35.99□□□□□ -1.452e-6■□□□□ 8.5
YBX3P16989 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.96□□□□□ -1.463e-8■□□□□ 8.5
YBX3P16989 PCM1-207ENST00000518762 546 ntTSL 45.52□□□□□ -1.532e-6■□□□□ 8.5
YBX3P16989 ASXL1-205ENST00000497249 296 ntTSL 55.34□□□□□ -1.552e-6■□□□□ 8.5
YBX3P16989 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.723e-8■□□□□ 8.5
YBX3P16989 PCK1-206ENST00000498194 783 ntTSL 215.32■□□□□ 0.043e-7■□□□□ 8.5
YBX3P16989 ATP2A2-205ENST00000547050 1176 ntTSL 49.86□□□□□ -0.832e-11■□□□□ 8.5
YBX3P16989 EIF2D-206ENST00000472709 750 ntTSL 58.86□□□□□ -0.994e-8■□□□□ 8.5
YBX3P16989 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.354e-8■□□□□ 8.5
YBX3P16989 SHMT2-225ENST00000556798 525 ntTSL 222.21■■□□□ 1.152e-7■□□□□ 8.5
YBX3P16989 MRPS27-206ENST00000515226 4435 ntTSL 26.33□□□□□ -1.41e-6■□□□□ 8.5
YBX3P16989 NBN-205ENST00000494804 593 ntTSL 316.57■□□□□ 0.245e-7■□□□□ 8.5
YBX3P16989 NBN-208ENST00000519426 535 ntTSL 416.4■□□□□ 0.225e-7■□□□□ 8.5
YBX3P16989 NBN-206ENST00000517337 565 ntTSL 49.49□□□□□ -0.895e-7■□□□□ 8.5
YBX3P16989 NBN-210ENST00000523444 593 ntTSL 47.31□□□□□ -1.245e-7■□□□□ 8.5
YBX3P16989 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.35■■□□□ 1.495e-7■□□□□ 8.5
Retrieved 100 of 29,075 protein–RNA pairs in 77.3 ms