Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 UNC93B8-201ENST00000511903 705 ntBASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX6-3A6NJ46 AC093323.1-202ENST00000635031 2045 ntBASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 AC004812.2-201ENST00000611079 2094 ntBASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX6-3A6NJ46 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
NKX6-3A6NJ46 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
NKX6-3A6NJ46 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX6-3A6NJ46 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
NKX6-3A6NJ46 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX6-3A6NJ46 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19■□□□□ 0.63
NKX6-3A6NJ46 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19■□□□□ 0.63
NKX6-3A6NJ46 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
NKX6-3A6NJ46 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
NKX6-3A6NJ46 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX6-3A6NJ46 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19■□□□□ 0.63
NKX6-3A6NJ46 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19■□□□□ 0.63
NKX6-3A6NJ46 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
NKX6-3A6NJ46 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 MIR6724-1-201ENST00000616420 92 ntBASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 MIR6724-2-201ENST00000616483 92 ntBASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 MIR6724-4-201ENST00000617390 92 ntBASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 MIR6724-3-201ENST00000622482 92 ntBASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX6-3A6NJ46 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 ABCB10P4-201ENST00000566803 2184 ntBASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX6-3A6NJ46 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX6-3A6NJ46 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 AL356441.2-201ENST00000443009 864 ntBASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms