Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.24■■□□□ 1.15
PCDHB3Q9Y5E6 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHB3Q9Y5E6 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
PCDHB3Q9Y5E6 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.24■■□□□ 1.15
PCDHB3Q9Y5E6 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.24■■□□□ 1.15
PCDHB3Q9Y5E6 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 MIR935-201ENST00000401179 91 ntBASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 AC010997.5-201ENST00000609182 354 ntBASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHB3Q9Y5E6 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 DUSP8P5-201ENST00000422884 1815 ntBASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 MTDHP2-201ENST00000601468 714 ntBASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 AC004812.2-201ENST00000611079 2094 ntBASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB3Q9Y5E6 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB3Q9Y5E6 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB3Q9Y5E6 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB3Q9Y5E6 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB3Q9Y5E6 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.2■■□□□ 1.14
PCDHB3Q9Y5E6 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.2■■□□□ 1.14
PCDHB3Q9Y5E6 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.2■■□□□ 1.14
PCDHB3Q9Y5E6 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 AL139246.5-201ENST00000606645 996 ntBASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 MIR6724-1-201ENST00000616420 92 ntBASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 MIR6724-2-201ENST00000616483 92 ntBASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 MIR6089-201ENST00000616698 64 ntBASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 MIR6724-4-201ENST00000617390 92 ntBASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 MIR6724-3-201ENST00000622482 92 ntBASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB3Q9Y5E6 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 AL356740.2-201ENST00000601559 647 ntBASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
PCDHB3Q9Y5E6 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHB3Q9Y5E6 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 MIR638-201ENST00000385237 100 ntBASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 AL136116.3-201ENST00000402907 1138 ntBASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 AC131281.2-201ENST00000520478 145 ntBASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms