Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 SLC6A10P-202ENST00000431994 2058 ntBASIC20.62■□□□□ 0.89
SNRNP40Q96DI7 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 AC022517.1-201ENST00000592429 346 ntBASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 IKBKGP1-201ENST00000612193 1073 ntBASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SNRNP40Q96DI7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 AC092803.2-201ENST00000564287 1899 ntBASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SNRNP40Q96DI7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNRNP40Q96DI7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 AC126544.1-201ENST00000580842 1059 ntBASIC20.58■□□□□ 0.89
SNRNP40Q96DI7 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
SNRNP40Q96DI7 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SNRNP40Q96DI7 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SNRNP40Q96DI7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNRNP40Q96DI7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 KRT18P5-201ENST00000436075 1291 ntBASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 YBX1P1-201ENST00000445822 960 ntBASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 AL137784.2-201ENST00000607332 1000 ntBASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 MIR6089-201ENST00000616698 64 ntBASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SNRNP40Q96DI7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 AL031602.1-201ENST00000633169 911 ntBASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNRNP40Q96DI7 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms