Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
DDX4Q9NQI0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
DDX4Q9NQI0 EDA-201ENST00000338901 1233 ntBASIC27.29■■□□□ 1.96
DDX4Q9NQI0 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
DDX4Q9NQI0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
DDX4Q9NQI0 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.28■■□□□ 1.96
DDX4Q9NQI0 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
DDX4Q9NQI0 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
DDX4Q9NQI0 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
DDX4Q9NQI0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
DDX4Q9NQI0 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC27.28■■□□□ 1.96
DDX4Q9NQI0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC27.28■■□□□ 1.96
DDX4Q9NQI0 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC27.27■■□□□ 1.96
DDX4Q9NQI0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
DDX4Q9NQI0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX4Q9NQI0 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
DDX4Q9NQI0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC27.27■■□□□ 1.96
DDX4Q9NQI0 AL355001.2-201ENST00000620617 1191 ntBASIC27.27■■□□□ 1.96
DDX4Q9NQI0 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC27.27■■□□□ 1.96
DDX4Q9NQI0 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX4Q9NQI0 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
DDX4Q9NQI0 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
DDX4Q9NQI0 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC27.26■■□□□ 1.95
DDX4Q9NQI0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC27.26■■□□□ 1.95
DDX4Q9NQI0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC27.26■■□□□ 1.95
DDX4Q9NQI0 AC099791.2-201ENST00000605725 427 ntBASIC27.26■■□□□ 1.95
DDX4Q9NQI0 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27.26■■□□□ 1.95
DDX4Q9NQI0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
DDX4Q9NQI0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.26■■□□□ 1.95
DDX4Q9NQI0 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
DDX4Q9NQI0 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
DDX4Q9NQI0 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
DDX4Q9NQI0 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
DDX4Q9NQI0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
DDX4Q9NQI0 SERBP1P1-201ENST00000396021 1160 ntBASIC27.25■■□□□ 1.95
DDX4Q9NQI0 AL136967.2-201ENST00000623968 743 ntBASIC27.25■■□□□ 1.95
DDX4Q9NQI0 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
DDX4Q9NQI0 AF213884.3-201ENST00000563833 479 ntBASIC27.24■■□□□ 1.95
DDX4Q9NQI0 GRAMD4P4-201ENST00000613563 1115 ntBASIC27.24■■□□□ 1.95
DDX4Q9NQI0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC27.24■■□□□ 1.95
DDX4Q9NQI0 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC27.24■■□□□ 1.95
DDX4Q9NQI0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
DDX4Q9NQI0 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC27.24■■□□□ 1.95
DDX4Q9NQI0 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC27.23■■□□□ 1.95
DDX4Q9NQI0 SYT6-210ENST00000641643 1587 ntBASIC27.23■■□□□ 1.95
DDX4Q9NQI0 DUX4L19-201ENST00000557448 1267 ntBASIC27.23■■□□□ 1.95
DDX4Q9NQI0 SF1-220ENST00000626028 704 ntTSL 2 BASIC27.23■■□□□ 1.95
DDX4Q9NQI0 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
DDX4Q9NQI0 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC27.23■■□□□ 1.95
DDX4Q9NQI0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
DDX4Q9NQI0 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
DDX4Q9NQI0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC27.22■■□□□ 1.95
DDX4Q9NQI0 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
DDX4Q9NQI0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
DDX4Q9NQI0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
DDX4Q9NQI0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
DDX4Q9NQI0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
DDX4Q9NQI0 AP001330.3-201ENST00000520123 633 ntBASIC27.22■■□□□ 1.95
DDX4Q9NQI0 MIR4767-201ENST00000582827 78 ntBASIC27.22■■□□□ 1.95
DDX4Q9NQI0 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
DDX4Q9NQI0 C17orf82-201ENST00000623772 1530 ntBASIC27.21■■□□□ 1.95
DDX4Q9NQI0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
DDX4Q9NQI0 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.95
DDX4Q9NQI0 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
DDX4Q9NQI0 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
DDX4Q9NQI0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
DDX4Q9NQI0 MIR939-201ENST00000401314 82 ntBASIC27.2■■□□□ 1.94
DDX4Q9NQI0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC27.2■■□□□ 1.94
DDX4Q9NQI0 AC022211.4-201ENST00000625094 2161 ntBASIC27.2■■□□□ 1.94
DDX4Q9NQI0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.2■■□□□ 1.94
DDX4Q9NQI0 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC27.2■■□□□ 1.94
DDX4Q9NQI0 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
DDX4Q9NQI0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
DDX4Q9NQI0 PTCHD3P2-201ENST00000424937 1205 ntBASIC27.19■■□□□ 1.94
DDX4Q9NQI0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
DDX4Q9NQI0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
DDX4Q9NQI0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
DDX4Q9NQI0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC27.19■■□□□ 1.94
DDX4Q9NQI0 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
DDX4Q9NQI0 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms