Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 C17orf82-201ENST00000623772 1530 ntBASIC28.18■■■□□ 2.1
RTFDC1Q9BY42 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.17■■■□□ 2.1
RTFDC1Q9BY42 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RTFDC1Q9BY42 JTB-203ENST00000368589 1216 ntTSL 2 BASIC28.17■■■□□ 2.1
RTFDC1Q9BY42 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RTFDC1Q9BY42 GLI3-203ENST00000437480 451 ntTSL 2 BASIC28.17■■■□□ 2.1
RTFDC1Q9BY42 RHOF-204ENST00000537265 699 ntTSL 2 BASIC28.17■■■□□ 2.1
RTFDC1Q9BY42 AC136469.2-201ENST00000623944 1028 ntBASIC28.17■■■□□ 2.1
RTFDC1Q9BY42 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
RTFDC1Q9BY42 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC28.16■■■□□ 2.1
RTFDC1Q9BY42 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
RTFDC1Q9BY42 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
RTFDC1Q9BY42 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC28.16■■■□□ 2.1
RTFDC1Q9BY42 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
RTFDC1Q9BY42 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RTFDC1Q9BY42 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
RTFDC1Q9BY42 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RTFDC1Q9BY42 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC28.14■■■□□ 2.1
RTFDC1Q9BY42 AC241377.3-202ENST00000626088 1088 ntBASIC28.14■■■□□ 2.1
RTFDC1Q9BY42 AC241585.3-202ENST00000628937 1088 ntBASIC28.14■■■□□ 2.1
RTFDC1Q9BY42 AC245100.8-202ENST00000629247 1058 ntBASIC28.14■■■□□ 2.1
RTFDC1Q9BY42 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RTFDC1Q9BY42 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC28.13■■■□□ 2.09
RTFDC1Q9BY42 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.13■■■□□ 2.09
RTFDC1Q9BY42 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC28.13■■■□□ 2.09
RTFDC1Q9BY42 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC28.13■■■□□ 2.09
RTFDC1Q9BY42 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RTFDC1Q9BY42 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
RTFDC1Q9BY42 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC28.12■■■□□ 2.09
RTFDC1Q9BY42 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
RTFDC1Q9BY42 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC28.12■■■□□ 2.09
RTFDC1Q9BY42 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
RTFDC1Q9BY42 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 MPST-208ENST00000628507 698 ntTSL 5 BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTFDC1Q9BY42 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RTFDC1Q9BY42 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.1■■■□□ 2.09
RTFDC1Q9BY42 MIR6089-201ENST00000616698 64 ntBASIC28.1■■■□□ 2.09
RTFDC1Q9BY42 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RTFDC1Q9BY42 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RTFDC1Q9BY42 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RTFDC1Q9BY42 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC28.09■■■□□ 2.09
RTFDC1Q9BY42 AC233992.3-201ENST00000607491 485 ntBASIC28.09■■■□□ 2.09
RTFDC1Q9BY42 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC28.09■■■□□ 2.09
RTFDC1Q9BY42 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RTFDC1Q9BY42 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
RTFDC1Q9BY42 AC006455.2-201ENST00000429931 906 ntBASIC28.08■■■□□ 2.09
RTFDC1Q9BY42 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC28.08■■■□□ 2.09
RTFDC1Q9BY42 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
RTFDC1Q9BY42 SLC6A10P-202ENST00000431994 2058 ntBASIC28.07■■■□□ 2.08
RTFDC1Q9BY42 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
RTFDC1Q9BY42 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
RTFDC1Q9BY42 BX842568.3-201ENST00000418104 571 ntBASIC28.07■■■□□ 2.08
RTFDC1Q9BY42 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
RTFDC1Q9BY42 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC28.07■■■□□ 2.08
RTFDC1Q9BY42 AL022069.1-201ENST00000568025 1636 ntBASIC28.07■■■□□ 2.08
RTFDC1Q9BY42 DUSP8P4-201ENST00000399538 1761 ntBASIC28.06■■■□□ 2.08
RTFDC1Q9BY42 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
RTFDC1Q9BY42 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
RTFDC1Q9BY42 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
RTFDC1Q9BY42 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.05■■■□□ 2.08
RTFDC1Q9BY42 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 MIR3181-201ENST00000578512 73 ntBASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC28.04■■■□□ 2.08
RTFDC1Q9BY42 SP2-202ENST00000613139 908 ntTSL 5 BASIC28.04■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 197 ms