Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.83■■□□□ 1.56
SIX2Q9NPC8 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
SIX2Q9NPC8 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.56
SIX2Q9NPC8 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SIX2Q9NPC8 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SIX2Q9NPC8 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.81■■□□□ 1.56
SIX2Q9NPC8 AL161729.1-201ENST00000604104 1402 ntBASIC24.81■■□□□ 1.56
SIX2Q9NPC8 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SIX2Q9NPC8 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC24.81■■□□□ 1.56
SIX2Q9NPC8 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
SIX2Q9NPC8 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.8■■□□□ 1.56
SIX2Q9NPC8 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.8■■□□□ 1.56
SIX2Q9NPC8 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC24.8■■□□□ 1.56
SIX2Q9NPC8 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
SIX2Q9NPC8 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC24.8■■□□□ 1.56
SIX2Q9NPC8 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SIX2Q9NPC8 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SIX2Q9NPC8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
SIX2Q9NPC8 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.79■■□□□ 1.56
SIX2Q9NPC8 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SIX2Q9NPC8 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.79■■□□□ 1.56
SIX2Q9NPC8 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.79■■□□□ 1.56
SIX2Q9NPC8 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SIX2Q9NPC8 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SIX2Q9NPC8 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
SIX2Q9NPC8 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 KRT18P24-201ENST00000344739 1156 ntBASIC24.78■■□□□ 1.56
SIX2Q9NPC8 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 AC103834.1-201ENST00000520383 144 ntBASIC24.78■■□□□ 1.56
SIX2Q9NPC8 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 AF131216.4-201ENST00000638924 1588 ntBASIC24.78■■□□□ 1.56
SIX2Q9NPC8 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SIX2Q9NPC8 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 MIR4281-201ENST00000580852 62 ntBASIC24.77■■□□□ 1.56
SIX2Q9NPC8 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC24.77■■□□□ 1.56
SIX2Q9NPC8 AL022069.1-201ENST00000568025 1636 ntBASIC24.76■■□□□ 1.55
SIX2Q9NPC8 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 MIR4508-201ENST00000584178 70 ntBASIC24.76■■□□□ 1.55
SIX2Q9NPC8 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SIX2Q9NPC8 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
SIX2Q9NPC8 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SIX2Q9NPC8 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SIX2Q9NPC8 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC24.75■■□□□ 1.55
SIX2Q9NPC8 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SIX2Q9NPC8 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SIX2Q9NPC8 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
SIX2Q9NPC8 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SIX2Q9NPC8 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24.74■■□□□ 1.55
SIX2Q9NPC8 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
SIX2Q9NPC8 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.73■■□□□ 1.55
SIX2Q9NPC8 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SIX2Q9NPC8 DUSP8P5-201ENST00000422884 1815 ntBASIC24.73■■□□□ 1.55
SIX2Q9NPC8 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.73■■□□□ 1.55
SIX2Q9NPC8 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SIX2Q9NPC8 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.73■■□□□ 1.55
SIX2Q9NPC8 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 THA1P-201ENST00000590384 1145 ntBASIC24.72■■□□□ 1.55
SIX2Q9NPC8 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
SIX2Q9NPC8 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
SIX2Q9NPC8 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
SIX2Q9NPC8 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC24.71■■□□□ 1.55
SIX2Q9NPC8 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms