Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PDLIM3Q53GG5 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC18.89■□□□□ 0.61
PDLIM3Q53GG5 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.89■□□□□ 0.61
PDLIM3Q53GG5 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.89■□□□□ 0.61
PDLIM3Q53GG5 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 MIR4508-201ENST00000584178 70 ntBASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 AL031848.2-201ENST00000607670 837 ntBASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDLIM3Q53GG5 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PDLIM3Q53GG5 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 AC239859.2-201ENST00000444165 318 ntBASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 AC012676.1-201ENST00000574705 1949 ntBASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.86■□□□□ 0.61
PDLIM3Q53GG5 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 AC026202.3-201ENST00000600805 1127 ntBASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 MIR6765-201ENST00000614092 87 ntBASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 PVT1_1.1-201ENST00000615125 194 ntBASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
PDLIM3Q53GG5 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PDLIM3Q53GG5 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.84■□□□□ 0.61
PDLIM3Q53GG5 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.84■□□□□ 0.61
PDLIM3Q53GG5 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PDLIM3Q53GG5 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PDLIM3Q53GG5 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.84■□□□□ 0.61
PDLIM3Q53GG5 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.84■□□□□ 0.61
PDLIM3Q53GG5 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PDLIM3Q53GG5 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PDLIM3Q53GG5 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PDLIM3Q53GG5 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PDLIM3Q53GG5 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC18.83■□□□□ 0.61
PDLIM3Q53GG5 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.83■□□□□ 0.6
PDLIM3Q53GG5 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PDLIM3Q53GG5 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
PDLIM3Q53GG5 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 AC103724.3-201ENST00000564481 992 ntBASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 SMPD5-203ENST00000639008 1464 ntBASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PDLIM3Q53GG5 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms