Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGB3O15347 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB3O15347 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB3O15347 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.55
HMGB3O15347 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB3O15347 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HMGB3O15347 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HMGB3O15347 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HMGB3O15347 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGB3O15347 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGB3O15347 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HMGB3O15347 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB3O15347 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HMGB3O15347 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB3O15347 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
HMGB3O15347 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
HMGB3O15347 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.44■□□□□ 0.54
HMGB3O15347 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGB3O15347 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC18.44■□□□□ 0.54
HMGB3O15347 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB3O15347 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB3O15347 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB3O15347 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB3O15347 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB3O15347 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB3O15347 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
HMGB3O15347 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGB3O15347 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB3O15347 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB3O15347 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGB3O15347 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.42■□□□□ 0.54
HMGB3O15347 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB3O15347 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
HMGB3O15347 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB3O15347 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB3O15347 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.42■□□□□ 0.54
HMGB3O15347 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB3O15347 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB3O15347 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB3O15347 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB3O15347 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB3O15347 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
HMGB3O15347 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB3O15347 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB3O15347 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGB3O15347 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
HMGB3O15347 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB3O15347 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB3O15347 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB3O15347 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB3O15347 AL359258.2-201ENST00000564063 1566 ntBASIC18.41■□□□□ 0.54
HMGB3O15347 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB3O15347 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB3O15347 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB3O15347 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB3O15347 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HMGB3O15347 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HMGB3O15347 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB3O15347 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB3O15347 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HMGB3O15347 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HMGB3O15347 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB3O15347 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB3O15347 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HMGB3O15347 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB3O15347 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGB3O15347 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB3O15347 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.39■□□□□ 0.54
HMGB3O15347 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB3O15347 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC18.39■□□□□ 0.53
HMGB3O15347 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB3O15347 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB3O15347 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB3O15347 AC021231.2-201ENST00000594613 730 ntBASIC18.39■□□□□ 0.53
HMGB3O15347 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB3O15347 AC087741.3-201ENST00000624270 1347 ntBASIC18.39■□□□□ 0.53
HMGB3O15347 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB3O15347 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.39■□□□□ 0.53
HMGB3O15347 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB3O15347 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB3O15347 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGB3O15347 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGB3O15347 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGB3O15347 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGB3O15347 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB3O15347 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB3O15347 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB3O15347 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB3O15347 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB3O15347 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB3O15347 MIR219A2-201ENST00000608502 1504 ntBASIC18.38■□□□□ 0.53
HMGB3O15347 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms