Protein–RNA interactions for Protein: P35125

USP6, Ubiquitin carboxyl-terminal hydrolase 6, humanhuman

Predictions only

Length 1,406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP6P35125 MIR6089-201ENST00000616698 64 ntBASIC31.7■■■□□ 2.67
USP6P35125 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC31.7■■■□□ 2.67
USP6P35125 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
USP6P35125 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC31.69■■■□□ 2.66
USP6P35125 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
USP6P35125 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
USP6P35125 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
USP6P35125 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC31.69■■■□□ 2.66
USP6P35125 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
USP6P35125 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.69■■■□□ 2.66
USP6P35125 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
USP6P35125 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC31.68■■■□□ 2.66
USP6P35125 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
USP6P35125 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP6P35125 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP6P35125 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP6P35125 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
USP6P35125 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC31.67■■■□□ 2.66
USP6P35125 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
USP6P35125 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
USP6P35125 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
USP6P35125 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP6P35125 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
USP6P35125 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP6P35125 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
USP6P35125 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP6P35125 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
USP6P35125 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC31.66■■■□□ 2.66
USP6P35125 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC31.66■■■□□ 2.66
USP6P35125 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USP6P35125 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USP6P35125 SLC6A10P-202ENST00000431994 2058 ntBASIC31.65■■■□□ 2.66
USP6P35125 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
USP6P35125 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.65■■■□□ 2.66
USP6P35125 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC31.65■■■□□ 2.66
USP6P35125 AC026271.2-201ENST00000428091 497 ntBASIC31.65■■■□□ 2.66
USP6P35125 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC31.65■■■□□ 2.66
USP6P35125 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
USP6P35125 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
USP6P35125 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC31.64■■■□□ 2.66
USP6P35125 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC31.64■■■□□ 2.66
USP6P35125 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
USP6P35125 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
USP6P35125 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC31.63■■■□□ 2.65
USP6P35125 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
USP6P35125 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC31.63■■■□□ 2.65
USP6P35125 AP001330.3-201ENST00000520123 633 ntBASIC31.63■■■□□ 2.65
USP6P35125 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC31.63■■■□□ 2.65
USP6P35125 SF1-220ENST00000626028 704 ntTSL 2 BASIC31.63■■■□□ 2.65
USP6P35125 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
USP6P35125 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC31.62■■■□□ 2.65
USP6P35125 AL355001.2-201ENST00000620617 1191 ntBASIC31.62■■■□□ 2.65
USP6P35125 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.62■■■□□ 2.65
USP6P35125 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP6P35125 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP6P35125 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
USP6P35125 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP6P35125 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC31.61■■■□□ 2.65
USP6P35125 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC31.61■■■□□ 2.65
USP6P35125 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
USP6P35125 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP6P35125 MIR939-201ENST00000401314 82 ntBASIC31.6■■■□□ 2.65
USP6P35125 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP6P35125 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
USP6P35125 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC31.6■■■□□ 2.65
USP6P35125 AF213884.3-201ENST00000563833 479 ntBASIC31.6■■■□□ 2.65
USP6P35125 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.6■■■□□ 2.65
USP6P35125 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP6P35125 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC31.59■■■□□ 2.65
USP6P35125 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP6P35125 REST-206ENST00000612429 1376 ntTSL 5 BASIC31.59■■■□□ 2.65
USP6P35125 REST-207ENST00000616975 1370 ntTSL 5 BASIC31.59■■■□□ 2.65
USP6P35125 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC31.59■■■□□ 2.65
USP6P35125 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP6P35125 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP6P35125 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC31.59■■■□□ 2.65
USP6P35125 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP6P35125 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC31.59■■■□□ 2.65
USP6P35125 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
USP6P35125 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
USP6P35125 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
USP6P35125 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
USP6P35125 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
USP6P35125 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
USP6P35125 LGR4-203ENST00000480977 492 ntTSL 2 BASIC31.58■■■□□ 2.65
USP6P35125 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC31.58■■■□□ 2.65
USP6P35125 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC31.57■■■□□ 2.64
USP6P35125 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP6P35125 DUSP8P4-201ENST00000399538 1761 ntBASIC31.57■■■□□ 2.64
USP6P35125 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
USP6P35125 AC105265.2-201ENST00000467189 838 ntBASIC31.57■■■□□ 2.64
USP6P35125 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC31.57■■■□□ 2.64
USP6P35125 GRAMD4P4-201ENST00000613563 1115 ntBASIC31.57■■■□□ 2.64
USP6P35125 AL136967.2-201ENST00000623968 743 ntBASIC31.57■■■□□ 2.64
USP6P35125 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
USP6P35125 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC31.56■■■□□ 2.64
USP6P35125 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP6P35125 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
USP6P35125 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
USP6P35125 DUX4L19-201ENST00000557448 1267 ntBASIC31.56■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms