Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.35■□□□□ 0.85
RHBDD3Q9Y3P4 AL592293.1-201ENST00000502889 1188 ntBASIC20.35■□□□□ 0.85
RHBDD3Q9Y3P4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDD3Q9Y3P4 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDD3Q9Y3P4 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.35■□□□□ 0.85
RHBDD3Q9Y3P4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDD3Q9Y3P4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RHBDD3Q9Y3P4 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.35■□□□□ 0.85
RHBDD3Q9Y3P4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDD3Q9Y3P4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDD3Q9Y3P4 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RHBDD3Q9Y3P4 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDD3Q9Y3P4 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDD3Q9Y3P4 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.34■□□□□ 0.85
RHBDD3Q9Y3P4 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RHBDD3Q9Y3P4 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.34■□□□□ 0.85
RHBDD3Q9Y3P4 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDD3Q9Y3P4 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RHBDD3Q9Y3P4 KRT18P10-201ENST00000388836 1287 ntBASIC20.33■□□□□ 0.85
RHBDD3Q9Y3P4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
RHBDD3Q9Y3P4 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
RHBDD3Q9Y3P4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.33■□□□□ 0.85
RHBDD3Q9Y3P4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RHBDD3Q9Y3P4 AC141586.4-201ENST00000624558 1573 ntBASIC20.33■□□□□ 0.84
RHBDD3Q9Y3P4 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RHBDD3Q9Y3P4 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.32■□□□□ 0.84
RHBDD3Q9Y3P4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RHBDD3Q9Y3P4 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RHBDD3Q9Y3P4 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
RHBDD3Q9Y3P4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.32■□□□□ 0.84
RHBDD3Q9Y3P4 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.32■□□□□ 0.84
RHBDD3Q9Y3P4 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RHBDD3Q9Y3P4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 U85056.1-201ENST00000616429 682 ntBASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.31■□□□□ 0.84
RHBDD3Q9Y3P4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RHBDD3Q9Y3P4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RHBDD3Q9Y3P4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
RHBDD3Q9Y3P4 SPCS2P3-201ENST00000500401 656 ntBASIC20.3■□□□□ 0.84
RHBDD3Q9Y3P4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RHBDD3Q9Y3P4 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 AC018755.3-202ENST00000596210 929 ntBASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 MIR6089-201ENST00000616698 64 ntBASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RHBDD3Q9Y3P4 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RHBDD3Q9Y3P4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RHBDD3Q9Y3P4 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 AC004812.2-201ENST00000611079 2094 ntBASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 AC133561.1-201ENST00000568600 2415 ntBASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.26■□□□□ 0.83
RHBDD3Q9Y3P4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RHBDD3Q9Y3P4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RHBDD3Q9Y3P4 DUX4L9-201ENST00000449051 1259 ntBASIC20.25■□□□□ 0.83
RHBDD3Q9Y3P4 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RHBDD3Q9Y3P4 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.24■□□□□ 0.83
RHBDD3Q9Y3P4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.24■□□□□ 0.83
RHBDD3Q9Y3P4 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RHBDD3Q9Y3P4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.24■□□□□ 0.83
RHBDD3Q9Y3P4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms