Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK1Q9Y566 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.38■■□□□ 1.01
SHANK1Q9Y566 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK1Q9Y566 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.38■■□□□ 1.01
SHANK1Q9Y566 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK1Q9Y566 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.38■■□□□ 1.01
SHANK1Q9Y566 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK1Q9Y566 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK1Q9Y566 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 AC092666.2-201ENST00000613287 246 ntBASIC21.37■■□□□ 1.01
SHANK1Q9Y566 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 AC135279.3-201ENST00000610945 1311 ntBASIC21.37■■□□□ 1.01
SHANK1Q9Y566 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.37■■□□□ 1.01
SHANK1Q9Y566 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK1Q9Y566 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK1Q9Y566 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.36■■□□□ 1.01
SHANK1Q9Y566 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.36■■□□□ 1.01
SHANK1Q9Y566 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.36■■□□□ 1.01
SHANK1Q9Y566 AC142381.2-201ENST00000566120 298 ntBASIC21.36■■□□□ 1.01
SHANK1Q9Y566 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK1Q9Y566 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.35■■□□□ 1.01
SHANK1Q9Y566 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
SHANK1Q9Y566 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.34■■□□□ 1.01
SHANK1Q9Y566 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
SHANK1Q9Y566 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK1Q9Y566 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.33■■□□□ 1.01
SHANK1Q9Y566 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.33■■□□□ 1.01
SHANK1Q9Y566 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.33■■□□□ 1.01
SHANK1Q9Y566 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHANK1Q9Y566 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SHANK1Q9Y566 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
SHANK1Q9Y566 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK1Q9Y566 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SHANK1Q9Y566 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHANK1Q9Y566 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SHANK1Q9Y566 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SHANK1Q9Y566 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.31■■□□□ 1
SHANK1Q9Y566 PBX2P1-201ENST00000493219 1291 ntBASIC21.31■■□□□ 1
SHANK1Q9Y566 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.31■■□□□ 1
SHANK1Q9Y566 SNX5-217ENST00000606557 1087 ntBASIC21.31■■□□□ 1
SHANK1Q9Y566 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.31■■□□□ 1
SHANK1Q9Y566 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.31■■□□□ 1
SHANK1Q9Y566 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK1Q9Y566 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK1Q9Y566 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
SHANK1Q9Y566 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK1Q9Y566 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHANK1Q9Y566 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SHANK1Q9Y566 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK1Q9Y566 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK1Q9Y566 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.3■■□□□ 1
SHANK1Q9Y566 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
SHANK1Q9Y566 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK1Q9Y566 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SHANK1Q9Y566 AC142472.1-201ENST00000612013 1741 ntBASIC21.29■■□□□ 1
SHANK1Q9Y566 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK1Q9Y566 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK1Q9Y566 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.29■■□□□ 1
SHANK1Q9Y566 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SHANK1Q9Y566 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.29■■□□□ 1
SHANK1Q9Y566 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHANK1Q9Y566 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK1Q9Y566 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.28■■□□□ 1
SHANK1Q9Y566 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.28■■□□□ 1
SHANK1Q9Y566 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK1Q9Y566 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHANK1Q9Y566 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.28■■□□□ 1
SHANK1Q9Y566 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHANK1Q9Y566 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
SHANK1Q9Y566 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.28■■□□□ 1
SHANK1Q9Y566 MIR5787-201ENST00000611784 55 ntBASIC21.27■■□□□ 1
SHANK1Q9Y566 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHANK1Q9Y566 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHANK1Q9Y566 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SHANK1Q9Y566 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.26■□□□□ 0.99
SHANK1Q9Y566 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.26■□□□□ 0.99
SHANK1Q9Y566 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms