Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
RC3H1Q5TC82 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
RC3H1Q5TC82 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
RC3H1Q5TC82 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
RC3H1Q5TC82 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
RC3H1Q5TC82 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC30.11■■■□□ 2.41
RC3H1Q5TC82 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
RC3H1Q5TC82 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RC3H1Q5TC82 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
RC3H1Q5TC82 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RC3H1Q5TC82 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
RC3H1Q5TC82 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC30.09■■■□□ 2.41
RC3H1Q5TC82 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
RC3H1Q5TC82 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RC3H1Q5TC82 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC30.08■■■□□ 2.41
RC3H1Q5TC82 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC30.08■■■□□ 2.41
RC3H1Q5TC82 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RC3H1Q5TC82 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RC3H1Q5TC82 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RC3H1Q5TC82 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
RC3H1Q5TC82 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
RC3H1Q5TC82 AL136162.1-201ENST00000607711 1078 ntBASIC30.07■■■□□ 2.4
RC3H1Q5TC82 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
RC3H1Q5TC82 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.07■■■□□ 2.4
RC3H1Q5TC82 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
RC3H1Q5TC82 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
RC3H1Q5TC82 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RC3H1Q5TC82 AC090877.2-201ENST00000558441 1738 ntBASIC30.05■■■□□ 2.4
RC3H1Q5TC82 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC30.05■■■□□ 2.4
RC3H1Q5TC82 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
RC3H1Q5TC82 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC30.05■■■□□ 2.4
RC3H1Q5TC82 AC092666.2-201ENST00000613287 246 ntBASIC30.05■■■□□ 2.4
RC3H1Q5TC82 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC30.05■■■□□ 2.4
RC3H1Q5TC82 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
RC3H1Q5TC82 AC135279.3-201ENST00000610945 1311 ntBASIC30.04■■■□□ 2.4
RC3H1Q5TC82 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RC3H1Q5TC82 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC30.04■■■□□ 2.4
RC3H1Q5TC82 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC30.04■■■□□ 2.4
RC3H1Q5TC82 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RC3H1Q5TC82 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
RC3H1Q5TC82 EDA-201ENST00000338901 1233 ntBASIC30.03■■■□□ 2.4
RC3H1Q5TC82 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RC3H1Q5TC82 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC30.03■■■□□ 2.4
RC3H1Q5TC82 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
RC3H1Q5TC82 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC30.03■■■□□ 2.4
RC3H1Q5TC82 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RC3H1Q5TC82 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
RC3H1Q5TC82 LBH-205ENST00000407930 756 ntTSL 2 BASIC30.02■■■□□ 2.4
RC3H1Q5TC82 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
RC3H1Q5TC82 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RC3H1Q5TC82 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RC3H1Q5TC82 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
RC3H1Q5TC82 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC30.01■■■□□ 2.39
RC3H1Q5TC82 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.39
RC3H1Q5TC82 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
RC3H1Q5TC82 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RC3H1Q5TC82 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30■■■□□ 2.39
RC3H1Q5TC82 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC30■■■□□ 2.39
RC3H1Q5TC82 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC30■■■□□ 2.39
RC3H1Q5TC82 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC30■■■□□ 2.39
RC3H1Q5TC82 AL355001.2-201ENST00000620617 1191 ntBASIC30■■■□□ 2.39
RC3H1Q5TC82 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RC3H1Q5TC82 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RC3H1Q5TC82 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
RC3H1Q5TC82 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.99■■■□□ 2.39
RC3H1Q5TC82 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
RC3H1Q5TC82 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
RC3H1Q5TC82 AC024257.2-201ENST00000549699 147 ntBASIC29.99■■■□□ 2.39
RC3H1Q5TC82 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
RC3H1Q5TC82 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC29.98■■■□□ 2.39
RC3H1Q5TC82 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
RC3H1Q5TC82 SRD5A1P1-201ENST00000442297 786 ntBASIC29.98■■■□□ 2.39
RC3H1Q5TC82 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC29.98■■■□□ 2.39
RC3H1Q5TC82 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
RC3H1Q5TC82 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
RC3H1Q5TC82 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
RC3H1Q5TC82 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC29.97■■■□□ 2.39
RC3H1Q5TC82 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
RC3H1Q5TC82 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
RC3H1Q5TC82 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC29.97■■■□□ 2.39
RC3H1Q5TC82 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
RC3H1Q5TC82 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC29.97■■■□□ 2.39
RC3H1Q5TC82 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
RC3H1Q5TC82 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
RC3H1Q5TC82 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
RC3H1Q5TC82 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.39
RC3H1Q5TC82 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
RC3H1Q5TC82 LGR4-203ENST00000480977 492 ntTSL 2 BASIC29.95■■■□□ 2.39
RC3H1Q5TC82 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC29.95■■■□□ 2.38
RC3H1Q5TC82 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
RC3H1Q5TC82 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC29.94■■■□□ 2.38
RC3H1Q5TC82 HYI-206ENST00000372434 1025 ntTSL 5 BASIC29.94■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms