Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 MIR935-201ENST00000401179 91 ntBASIC27.14■■□□□ 1.94
SMCHD1A6NHR9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC27.14■■□□□ 1.94
SMCHD1A6NHR9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC27.14■■□□□ 1.94
SMCHD1A6NHR9 AF131216.4-201ENST00000638924 1588 ntBASIC27.14■■□□□ 1.94
SMCHD1A6NHR9 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.14■■□□□ 1.94
SMCHD1A6NHR9 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
SMCHD1A6NHR9 AC011551.1-201ENST00000614101 683 ntBASIC27.14■■□□□ 1.93
SMCHD1A6NHR9 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC27.13■■□□□ 1.93
SMCHD1A6NHR9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMCHD1A6NHR9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC27.13■■□□□ 1.93
SMCHD1A6NHR9 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC27.13■■□□□ 1.93
SMCHD1A6NHR9 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMCHD1A6NHR9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC27.12■■□□□ 1.93
SMCHD1A6NHR9 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMCHD1A6NHR9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC27.12■■□□□ 1.93
SMCHD1A6NHR9 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SMCHD1A6NHR9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 FOXO3B-201ENST00000395675 1928 ntBASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMCHD1A6NHR9 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMCHD1A6NHR9 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 MIR638-201ENST00000385237 100 ntBASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMCHD1A6NHR9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SMCHD1A6NHR9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.93
SMCHD1A6NHR9 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC27.07■■□□□ 1.92
SMCHD1A6NHR9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC27.07■■□□□ 1.92
SMCHD1A6NHR9 AC092028.1-203ENST00000608262 953 ntBASIC27.07■■□□□ 1.92
SMCHD1A6NHR9 SRR-208ENST00000576848 588 ntTSL 4 BASIC27.07■■□□□ 1.92
SMCHD1A6NHR9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC27.07■■□□□ 1.92
SMCHD1A6NHR9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
SMCHD1A6NHR9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
SMCHD1A6NHR9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SMCHD1A6NHR9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC27.06■■□□□ 1.92
SMCHD1A6NHR9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
SMCHD1A6NHR9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SMCHD1A6NHR9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC27.05■■□□□ 1.92
SMCHD1A6NHR9 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.05■■□□□ 1.92
SMCHD1A6NHR9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SMCHD1A6NHR9 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC27.04■■□□□ 1.92
SMCHD1A6NHR9 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC27.04■■□□□ 1.92
SMCHD1A6NHR9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SMCHD1A6NHR9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC27.04■■□□□ 1.92
SMCHD1A6NHR9 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
SMCHD1A6NHR9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SMCHD1A6NHR9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC27.03■■□□□ 1.92
SMCHD1A6NHR9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SMCHD1A6NHR9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SMCHD1A6NHR9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
SMCHD1A6NHR9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC27.02■■□□□ 1.92
SMCHD1A6NHR9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.02■■□□□ 1.92
SMCHD1A6NHR9 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SMCHD1A6NHR9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC27.02■■□□□ 1.92
SMCHD1A6NHR9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.92
SMCHD1A6NHR9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SMCHD1A6NHR9 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
SMCHD1A6NHR9 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
SMCHD1A6NHR9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC27■■□□□ 1.91
SMCHD1A6NHR9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SMCHD1A6NHR9 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
SMCHD1A6NHR9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC27■■□□□ 1.91
SMCHD1A6NHR9 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
SMCHD1A6NHR9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC27■■□□□ 1.91
SMCHD1A6NHR9 AC110285.6-201ENST00000617652 491 ntBASIC27■■□□□ 1.91
SMCHD1A6NHR9 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SMCHD1A6NHR9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
SMCHD1A6NHR9 TSPY9P-201ENST00000440215 945 ntBASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 TSPY11P-201ENST00000442607 1045 ntBASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 DUSP8P4-201ENST00000399538 1761 ntBASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 AC091060.1-201ENST00000623524 1766 ntBASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.99■■□□□ 1.91
SMCHD1A6NHR9 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.98■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms