Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.747e-6■□□□□ 11.2
LIN28BQ6ZN17 POU2F1-203ENST00000367865 14332 ntTSL 24.15□□□□□ -1.747e-6■□□□□ 11.2
LIN28BQ6ZN17 POU2F1-208ENST00000443275 12939 ntTSL 1 (best)4.15□□□□□ -1.757e-6■□□□□ 11.2
LIN28BQ6ZN17 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.781e-8■□□□□ 11.2
LIN28BQ6ZN17 YIPF4-203ENST00000441084 312 ntTSL 33.95□□□□□ -1.787e-6■□□□□ 11.2
LIN28BQ6ZN17 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.787e-6■□□□□ 11.2
LIN28BQ6ZN17 CDC42BPA-213ENST00000488131 1859 ntTSL 53.85□□□□□ -1.797e-6■□□□□ 11.2
LIN28BQ6ZN17 STRAP-203ENST00000536737 434 ntTSL 23.73□□□□□ -1.817e-6■□□□□ 11.2
LIN28BQ6ZN17 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.827e-6■□□□□ 11.2
LIN28BQ6ZN17 CAPN2-205ENST00000472601 625 ntTSL 33.09□□□□□ -1.917e-6■□□□□ 11.2
LIN28BQ6ZN17 CAPN2-211ENST00000492664 590 ntTSL 33.09□□□□□ -1.917e-6■□□□□ 11.2
LIN28BQ6ZN17 HSPA8-214ENST00000531063 578 ntTSL 23.03□□□□□ -1.927e-6■□□□□ 11.2
LIN28BQ6ZN17 HBS1L-207ENST00000524715 551 ntTSL 42.77□□□□□ -1.977e-6■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-211ENST00000472753 503 ntTSL 32.42□□□□□ -2.024e-11■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-213ENST00000478612 528 ntTSL 32.28□□□□□ -2.044e-11■□□□□ 11.2
LIN28BQ6ZN17 UBAC1-206ENST00000489050 864 ntTSL 311.31□□□□□ -0.65e-8■□□□□ 11.2
LIN28BQ6ZN17 CLSTN3-206ENST00000535668 566 ntTSL 312.95□□□□□ -0.345e-8■□□□□ 11.2
LIN28BQ6ZN17 SF3B3-208ENST00000567250 1084 ntTSL 313.39□□□□□ -0.277e-7■□□□□ 11.2
LIN28BQ6ZN17 SF3B3-211ENST00000568291 1067 ntTSL 210.74□□□□□ -0.697e-7■□□□□ 11.2
LIN28BQ6ZN17 NONO-203ENST00000373856 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.241e-6■□□□□ 11.2
LIN28BQ6ZN17 NONO-202ENST00000373841 2606 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.441e-6■□□□□ 11.2
LIN28BQ6ZN17 NONO-205ENST00000418921 703 ntTSL 510.82□□□□□ -0.681e-6■□□□□ 11.2
LIN28BQ6ZN17 NONO-215ENST00000535149 2882 ntTSL 2 BASIC10.38□□□□□ -0.751e-6■□□□□ 11.2
LIN28BQ6ZN17 NONO-201ENST00000276079 2713 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.791e-6■□□□□ 11.2
LIN28BQ6ZN17 NONO-212ENST00000474431 644 ntTSL 59.38□□□□□ -0.911e-6■□□□□ 11.2
LIN28BQ6ZN17 NONO-204ENST00000413858 855 ntTSL 38.84□□□□□ -0.991e-6■□□□□ 11.2
LIN28BQ6ZN17 NONO-210ENST00000472185 397 ntTSL 57.85□□□□□ -1.151e-6■□□□□ 11.2
LIN28BQ6ZN17 NONO-209ENST00000471419 846 ntTSL 27.4□□□□□ -1.221e-6■□□□□ 11.2
LIN28BQ6ZN17 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.81e-7■□□□□ 11.2
LIN28BQ6ZN17 HINT1-209ENST00000513345 656 ntTSL 217.47■□□□□ 0.391e-7■□□□□ 11.2
LIN28BQ6ZN17 HINT1-206ENST00000508495 825 ntTSL 1 (best)16.91■□□□□ 0.31e-7■□□□□ 11.2
LIN28BQ6ZN17 HINT1-207ENST00000511475 923 ntTSL 311.83□□□□□ -0.521e-7■□□□□ 11.2
LIN28BQ6ZN17 HINT1-203ENST00000506207 369 ntTSL 56.62□□□□□ -1.351e-7■□□□□ 11.2
LIN28BQ6ZN17 EIF3H-208ENST00000520813 562 ntTSL 418.07■□□□□ 0.488e-7■□□□□ 11.2
LIN28BQ6ZN17 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.594e-9■□□□□ 11.2
LIN28BQ6ZN17 SAT1-207ENST00000474223 1033 ntTSL 26.88□□□□□ -1.313e-8■□□□□ 11.2
LIN28BQ6ZN17 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.332e-9■□□□□ 11.2
LIN28BQ6ZN17 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.232e-9■□□□□ 11.2
LIN28BQ6ZN17 FAM198B-207ENST00000592057 3425 ntTSL 2 BASIC11.84□□□□□ -0.516e-11■□□□□ 11.2
LIN28BQ6ZN17 NCL-202ENST00000356936 890 ntTSL 319.36■□□□□ 0.692e-8■□□□□ 11.2
LIN28BQ6ZN17 C12orf57-203ENST00000538392 979 ntTSL 221.4■■□□□ 1.023e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.983e-6■□□□□ 11.1
LIN28BQ6ZN17 NDUFB4-204ENST00000491335 558 ntTSL 220.86■□□□□ 0.933e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-201ENST00000466684 1417 ntTSL 218.83■□□□□ 0.613e-6■□□□□ 11.1
LIN28BQ6ZN17 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.22■□□□□ 0.353e-6■□□□□ 11.1
LIN28BQ6ZN17 NDUFB4-202ENST00000461682 821 ntTSL 317.13■□□□□ 0.333e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-212ENST00000495265 2843 ntTSL 216.37■□□□□ 0.213e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-207ENST00000489093 1139 ntTSL 315.63■□□□□ 0.093e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-208ENST00000489816 3170 ntTSL 1 (best)15.54■□□□□ 0.083e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-213ENST00000495794 4865 ntTSL 213.39□□□□□ -0.273e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-204ENST00000483173 2120 ntTSL 2 BASIC13.35□□□□□ -0.273e-6■□□□□ 11.1
LIN28BQ6ZN17 INIP-203ENST00000374242 4233 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.493e-6■□□□□ 11.1
LIN28BQ6ZN17 NDUFB4-203ENST00000485064 1426 ntTSL 1 (best) BASIC11.85□□□□□ -0.513e-6■□□□□ 11.1
LIN28BQ6ZN17 NDUFB4-205ENST00000492739 309 ntTSL 2 BASIC10.31□□□□□ -0.763e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-209ENST00000490814 3477 ntTSL 1 (best)9.77□□□□□ -0.853e-6■□□□□ 11.1
LIN28BQ6ZN17 C1orf27-203ENST00000419367 1900 ntTSL 2 BASIC8.76□□□□□ -1.013e-6■□□□□ 11.1
LIN28BQ6ZN17 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.113e-6■□□□□ 11.1
LIN28BQ6ZN17 BRD9-211ENST00000494422 449 ntTSL 36.95□□□□□ -1.33e-6■□□□□ 11.1
LIN28BQ6ZN17 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.18□□□□□ -1.423e-6■□□□□ 11.1
LIN28BQ6ZN17 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.443e-6■□□□□ 11.1
LIN28BQ6ZN17 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.251e-60■□□□□ 11.1
LIN28BQ6ZN17 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.861e-60■□□□□ 11.1
LIN28BQ6ZN17 RPS14-205ENST00000519690 3119 ntTSL 215.16■□□□□ 0.021e-60■□□□□ 11.1
LIN28BQ6ZN17 RPS14-204ENST00000518139 669 ntTSL 313.19□□□□□ -0.31e-60■□□□□ 11.1
LIN28BQ6ZN17 RPS14-202ENST00000401695 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.391e-60■□□□□ 11.1
LIN28BQ6ZN17 RPS14-207ENST00000521466 592 ntAPPRIS P1 TSL 512.48□□□□□ -0.411e-60■□□□□ 11.1
LIN28BQ6ZN17 CALM2-206ENST00000482532 1891 ntTSL 211.91□□□□□ -0.55e-7■□□□□ 11.1
LIN28BQ6ZN17 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC15.17■□□□□ 0.029e-9■□□□□ 11.1
LIN28BQ6ZN17 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.581e-6■□□□□ 11.1
LIN28BQ6ZN17 CDK1-203ENST00000395284 1913 ntAPPRIS P2 TSL 1 (best) BASIC9.08□□□□□ -0.961e-6■□□□□ 11.1
LIN28BQ6ZN17 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.43□□□□□ -1.861e-6■□□□□ 11.1
LIN28BQ6ZN17 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.76□□□□□ -1.971e-6■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-216ENST00000564170 552 ntTSL 423.72■■□□□ 1.392e-8■□□□□ 11.1
LIN28BQ6ZN17 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.68■□□□□ 0.582e-7■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.382e-8■□□□□ 11.1
LIN28BQ6ZN17 SOD2-202ENST00000367054 815 ntTSL 2 BASIC15.98■□□□□ 0.152e-7■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-218ENST00000566982 3024 ntTSL 215.49■□□□□ 0.072e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.46■□□□□ 0.062e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-222ENST00000569340 714 ntTSL 314.93□□□□□ -0.022e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.082e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.112e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.26□□□□□ -0.132e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.152e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.192e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-211ENST00000562556 4659 ntTSL 213.07□□□□□ -0.322e-8■□□□□ 11.1
LIN28BQ6ZN17 BCAR1-203ENST00000393422 4064 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.452e-8■□□□□ 11.1
LIN28BQ6ZN17 SOD2-203ENST00000367055 990 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.552e-7■□□□□ 11.1
LIN28BQ6ZN17 SOD2-216ENST00000546260 4302 ntTSL 58.85□□□□□ -0.992e-7■□□□□ 11.1
LIN28BQ6ZN17 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.32e-7■□□□□ 11.1
LIN28BQ6ZN17 ADGRG6-208ENST00000472054 1247 ntTSL 25.91□□□□□ -1.464e-10■□□□□ 11.1
LIN28BQ6ZN17 ALDH1A2-224ENST00000561070 554 ntTSL 411.15□□□□□ -0.621e-9■□□□□ 11.1
LIN28BQ6ZN17 ALDH1A2-215ENST00000559266 545 ntTSL 411.06□□□□□ -0.641e-9■□□□□ 11.1
LIN28BQ6ZN17 SUPT5H-218ENST00000600818 718 ntTSL 215.19■□□□□ 0.023e-6■□□□□ 11.1
LIN28BQ6ZN17 DCUN1D5-210ENST00000531571 1535 ntTSL 528.75■■■□□ 2.191e-7■□□□□ 11.1
LIN28BQ6ZN17 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.111e-7■□□□□ 11.1
LIN28BQ6ZN17 DCUN1D5-204ENST00000527576 790 ntTSL 526.48■■□□□ 1.831e-7■□□□□ 11.1
LIN28BQ6ZN17 DCUN1D5-205ENST00000527779 842 ntTSL 221.34■■□□□ 1.011e-7■□□□□ 11.1
LIN28BQ6ZN17 DCUN1D5-202ENST00000525420 651 ntTSL 318.92■□□□□ 0.621e-7■□□□□ 11.1
LIN28BQ6ZN17 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.99■□□□□ 0.471e-7■□□□□ 11.1
LIN28BQ6ZN17 DCUN1D5-207ENST00000529281 1310 ntTSL 217.65■□□□□ 0.421e-7■□□□□ 11.1
Retrieved 100 of 21,972 protein–RNA pairs in 368.8 ms