RNA–Protein interactions for RNA: ENST00000490814.6

BRD9-209, Transcript of bromodomain containing 9, humanhuman

TSL 1 (best)

Gene BRD9, Length 3,477 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD9-209ENST00000490814 NISCHQ9Y2I1 1504 aa19.93■□□□□ 0.78
BRD9-209ENST00000490814 DCAF8L2P0C7V8 631 aa17.89■□□□□ 0.46
BRD9-209ENST00000490814 SHROOM4Q9ULL8 1493 aa17.5■□□□□ 0.39
BRD9-209ENST00000490814 ABCC9O60706 1549 aa17.46■□□□□ 0.39
BRD9-209ENST00000490814 PELP1Q8IZL8 1130 aaKnown RBP17.38■□□□□ 0.37
BRD9-209ENST00000490814 SUPT5HO00267 1087 aaKnown RBP17.33■□□□□ 0.36
BRD9-209ENST00000490814 CCDC180Q9P1Z9 1646 aa17.09■□□□□ 0.33
BRD9-209ENST00000490814 MYT1Q01538 1121 aa17■□□□□ 0.31
BRD9-209ENST00000490814 HRCP23327 699 aa16.77■□□□□ 0.27
BRD9-209ENST00000490814 PABPN1Q86U42 306 aaKnown RBP eCLIP16.72■□□□□ 0.27
BRD9-209ENST00000490814 PCGF6Q9BYE7 350 aa16.64■□□□□ 0.25
BRD9-209ENST00000490814 CHIC1Q5VXU3 224 aa16.62■□□□□ 0.25
BRD9-209ENST00000490814 PPARGC1BQ86YN6 1023 aaKnown RBP16.58■□□□□ 0.24
BRD9-209ENST00000490814 ZCCHC6Q5VYS8 1495 aaKnown RBP16.54■□□□□ 0.24
BRD9-209ENST00000490814 MYO15BQ96JP2 1530 aa16.5■□□□□ 0.23
BRD9-209ENST00000490814 LOC105371045A0A1W2PR82 267 aa16.36■□□□□ 0.21
BRD9-209ENST00000490814 RB1CC1Q8TDY2 1594 aa16.34■□□□□ 0.21
BRD9-209ENST00000490814 SCRIBQ14160 1630 aa16.33■□□□□ 0.21
BRD9-209ENST00000490814 NACADO15069 1562 aa16.27■□□□□ 0.2
BRD9-209ENST00000490814 TTBK1Q5TCY1 1321 aaPredicted RBP16.19■□□□□ 0.18
BRD9-209ENST00000490814 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
BRD9-209ENST00000490814 SCAF1Q9H7N4 1312 aaKnown RBP16.17■□□□□ 0.18
BRD9-209ENST00000490814 FAM9AQ8IZU1 332 aaPredicted RBP16.1■□□□□ 0.17
BRD9-209ENST00000490814 DCAF1Q9Y4B6 1507 aa16.06■□□□□ 0.16
BRD9-209ENST00000490814 TRIM26Q12899 539 aaPredicted RBP16.01■□□□□ 0.15
BRD9-209ENST00000490814 TRIM41Q8WV44 630 aa15.97■□□□□ 0.15
BRD9-209ENST00000490814 DNAJC5BQ9UF47 199 aa15.88■□□□□ 0.13
BRD9-209ENST00000490814 ZEB1P37275 1124 aaPredicted RBP15.81■□□□□ 0.12
BRD9-209ENST00000490814 CECR2Q9BXF3 1484 aa15.8■□□□□ 0.12
BRD9-209ENST00000490814 PRKCSHP14314 528 aaPredicted RBP15.77■□□□□ 0.11
BRD9-209ENST00000490814 BICRAQ9NZM4 1560 aa15.75■□□□□ 0.11
BRD9-209ENST00000490814 UNC13AQ9UPW8 1703 aa15.73■□□□□ 0.11
BRD9-209ENST00000490814 BCL11AQ9H165 835 aa15.71■□□□□ 0.11
BRD9-209ENST00000490814 RSF1Q96T23 1441 aaPredicted RBP15.68■□□□□ 0.1
BRD9-209ENST00000490814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
BRD9-209ENST00000490814 CCER1Q8TC90 406 aaPredicted RBP15.54■□□□□ 0.08
BRD9-209ENST00000490814 ACIN1Q9UKV3 1341 aaKnown RBP15.54■□□□□ 0.08
BRD9-209ENST00000490814 MROH2BQ7Z745 1585 aa15.53■□□□□ 0.08
BRD9-209ENST00000490814 CENPBP07199 599 aaPredicted RBP15.51■□□□□ 0.07
BRD9-209ENST00000490814 NEUROD1Q13562 356 aa15.5■□□□□ 0.07
BRD9-209ENST00000490814 GTF3C3Q9Y5Q9 886 aa15.48■□□□□ 0.07
BRD9-209ENST00000490814 EIF4G1Q04637 1599 aaKnown RBP15.47■□□□□ 0.07
BRD9-209ENST00000490814 ERICH6Q7L0X2 663 aa15.47■□□□□ 0.07
BRD9-209ENST00000490814 BAZ1AQ9NRL2 1556 aaPredicted RBP15.39■□□□□ 0.05
BRD9-209ENST00000490814 CC2D2AQ9P2K1 1620 aa15.39■□□□□ 0.05
BRD9-209ENST00000490814 DIEXFQ68CQ4 756 aaKnown RBP15.35■□□□□ 0.05
BRD9-209ENST00000490814 WIZO95785 1651 aa15.34■□□□□ 0.05
BRD9-209ENST00000490814 BAZ1BQ9UIG0 1483 aaKnown RBP15.34■□□□□ 0.05
BRD9-209ENST00000490814 ATAD2BQ9ULI0 1458 aa15.34■□□□□ 0.05
BRD9-209ENST00000490814 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
BRD9-209ENST00000490814 UBTFP17480 764 aaKnown RBP15.29■□□□□ 0.04
BRD9-209ENST00000490814 YTHDC1Q96MU7 727 aaKnown RBP15.28■□□□□ 0.04
BRD9-209ENST00000490814 APLP2Q06481 763 aa15.27■□□□□ 0.04
BRD9-209ENST00000490814 RANGAP1P46060 587 aaPredicted RBP15.2■□□□□ 0.02
BRD9-209ENST00000490814 SMARCA2P51531 1590 aa15.17■□□□□ 0.02
BRD9-209ENST00000490814 ANP32EQ9BTT0 268 aa15.15■□□□□ 0.02
BRD9-209ENST00000490814 NCAPD3P42695 1498 aa15.14■□□□□ 0.01
BRD9-209ENST00000490814 HNRNPUL2Q1KMD3 747 aaKnown RBP15.13■□□□□ 0.01
BRD9-209ENST00000490814 ABCC8Q09428 1581 aa15.1■□□□□ 0.01
BRD9-209ENST00000490814 NESP48681 1621 aa15.1■□□□□ 0.01
BRD9-209ENST00000490814 CCDC88BA6NC98 1476 aa15.1■□□□□ 0.01
BRD9-209ENST00000490814 CSRNP3Q8WYN3 585 aa15.07■□□□□ 0
BRD9-209ENST00000490814 CEP162Q5TB80 1403 aa15.07■□□□□ 0
BRD9-209ENST00000490814 SOGA1O94964 1423 aa15.06■□□□□ 0
BRD9-209ENST00000490814 ERCC6Q03468 1493 aa15.03■□□□□ -0
BRD9-209ENST00000490814 ZNF316A6NFI3 1004 aaPredicted RBP15.01□□□□□ -0.01
BRD9-209ENST00000490814 TOP2AP11388 1531 aaKnown RBP14.99□□□□□ -0.01
BRD9-209ENST00000490814 CADPSQ9ULU8 1353 aa14.97□□□□□ -0.01
BRD9-209ENST00000490814 RUSC2Q8N2Y8 1516 aa14.95□□□□□ -0.02
BRD9-209ENST00000490814 MIER1Q8N108 512 aa14.94□□□□□ -0.02
BRD9-209ENST00000490814 TNIKQ9UKE5 1360 aa14.93□□□□□ -0.02
BRD9-209ENST00000490814 HMGXB3Q12766 1538 aa14.9□□□□□ -0.02
BRD9-209ENST00000490814 FBLN2P98095 1184 aa14.89□□□□□ -0.03
BRD9-209ENST00000490814 WRNQ14191 1432 aaPredicted RBP eCLIP14.87□□□□□ -0.037e-9■■□□□ 11.4
BRD9-209ENST00000490814 PEG3Q9GZU2 1588 aa14.85□□□□□ -0.03
BRD9-209ENST00000490814 PDS5BQ9NTI5 1447 aa14.84□□□□□ -0.03
BRD9-209ENST00000490814 GOLGA3Q08378 1498 aa14.82□□□□□ -0.04
BRD9-209ENST00000490814 FANCD2Q9BXW9 1451 aa14.8□□□□□ -0.04
BRD9-209ENST00000490814 EEA1Q15075 1411 aa14.79□□□□□ -0.04
BRD9-209ENST00000490814 CLIP1P30622 1438 aa14.78□□□□□ -0.04
BRD9-209ENST00000490814 ITGAEP38570 1179 aa14.76□□□□□ -0.05
BRD9-209ENST00000490814 CFTRP13569 1480 aa14.74□□□□□ -0.05
BRD9-209ENST00000490814 CEP164Q9UPV0 1460 aa14.72□□□□□ -0.05
BRD9-209ENST00000490814 SLC24A1O60721 1099 aa14.69□□□□□ -0.06
BRD9-209ENST00000490814 TDRD9Q8NDG6 1382 aaKnown RBP14.69□□□□□ -0.06
BRD9-209ENST00000490814 TSHZ2Q9NRE2 1034 aa14.66□□□□□ -0.06
BRD9-209ENST00000490814 SUPT16HQ9Y5B9 1047 aaKnown RBP14.65□□□□□ -0.06
BRD9-209ENST00000490814 ANO8Q9HCE9 1232 aaPredicted RBP14.64□□□□□ -0.07
BRD9-209ENST00000490814 VPS8Q8N3P4 1428 aa14.63□□□□□ -0.07
BRD9-209ENST00000490814 RAPGEF2Q9Y4G8 1499 aa14.63□□□□□ -0.07
BRD9-209ENST00000490814 RAD54L2Q9Y4B4 1467 aa14.61□□□□□ -0.07
BRD9-209ENST00000490814 LAMC3Q9Y6N6 1575 aa14.6□□□□□ -0.07
BRD9-209ENST00000490814 BCANQ96GW7 911 aa14.59□□□□□ -0.07
BRD9-209ENST00000490814 SYNJ1O43426 1573 aa14.58□□□□□ -0.07
BRD9-209ENST00000490814 KANK4Q5T7N3 995 aaPredicted RBP14.58□□□□□ -0.08
BRD9-209ENST00000490814 ATP1B4Q9UN42 357 aaPredicted RBP14.57□□□□□ -0.08
BRD9-209ENST00000490814 CHMP7Q8WUX9 453 aaPredicted RBP14.56□□□□□ -0.08
BRD9-209ENST00000490814 URB2Q14146 1524 aaKnown RBP14.54□□□□□ -0.08
BRD9-209ENST00000490814 AQRO60306 1485 aaKnown RBP eCLIP14.54□□□□□ -0.084e-7■■■■■ 37.4
BRD9-209ENST00000490814 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms