Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HDDC3Q8N4P3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 MIR638-201ENST00000385237 100 ntBASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HDDC3Q8N4P3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HDDC3Q8N4P3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HDDC3Q8N4P3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
HDDC3Q8N4P3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.79■■□□□ 1.4
HDDC3Q8N4P3 MIR4281-201ENST00000580852 62 ntBASIC23.79■■□□□ 1.4
HDDC3Q8N4P3 ERN1-208ENST00000606895 2068 ntBASIC23.79■■□□□ 1.4
HDDC3Q8N4P3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
HDDC3Q8N4P3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HDDC3Q8N4P3 TSPY9P-201ENST00000440215 945 ntBASIC23.78■■□□□ 1.4
HDDC3Q8N4P3 TSPY11P-201ENST00000442607 1045 ntBASIC23.78■■□□□ 1.4
HDDC3Q8N4P3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HDDC3Q8N4P3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HDDC3Q8N4P3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.78■■□□□ 1.4
HDDC3Q8N4P3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HDDC3Q8N4P3 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HDDC3Q8N4P3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.77■■□□□ 1.4
HDDC3Q8N4P3 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.77■■□□□ 1.4
HDDC3Q8N4P3 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HDDC3Q8N4P3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HDDC3Q8N4P3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HDDC3Q8N4P3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.76■■□□□ 1.39
HDDC3Q8N4P3 AL139246.5-201ENST00000606645 996 ntBASIC23.76■■□□□ 1.39
HDDC3Q8N4P3 AC021242.3-201ENST00000607598 1377 ntBASIC23.76■■□□□ 1.39
HDDC3Q8N4P3 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HDDC3Q8N4P3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.75■■□□□ 1.39
HDDC3Q8N4P3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HDDC3Q8N4P3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HDDC3Q8N4P3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HDDC3Q8N4P3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HDDC3Q8N4P3 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.75■■□□□ 1.39
HDDC3Q8N4P3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HDDC3Q8N4P3 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 AC011551.1-201ENST00000614101 683 ntBASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HDDC3Q8N4P3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.73■■□□□ 1.39
HDDC3Q8N4P3 FOXO3B-201ENST00000395675 1928 ntBASIC23.73■■□□□ 1.39
HDDC3Q8N4P3 AC096887.2-201ENST00000623443 1957 ntBASIC23.73■■□□□ 1.39
HDDC3Q8N4P3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.73■■□□□ 1.39
HDDC3Q8N4P3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.73■■□□□ 1.39
HDDC3Q8N4P3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
HDDC3Q8N4P3 AL121749.1-202ENST00000609313 2153 ntBASIC23.73■■□□□ 1.39
HDDC3Q8N4P3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.73■■□□□ 1.39
HDDC3Q8N4P3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
HDDC3Q8N4P3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HDDC3Q8N4P3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.72■■□□□ 1.39
HDDC3Q8N4P3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HDDC3Q8N4P3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HDDC3Q8N4P3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.71■■□□□ 1.39
HDDC3Q8N4P3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.71■■□□□ 1.39
HDDC3Q8N4P3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.71■■□□□ 1.39
HDDC3Q8N4P3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
HDDC3Q8N4P3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HDDC3Q8N4P3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 AC097639.1-201ENST00000565519 1891 ntBASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 AC092028.1-203ENST00000608262 953 ntBASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HDDC3Q8N4P3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
HDDC3Q8N4P3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms