Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
LRRK1Q38SD2 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.57■■□□□ 1.36
LRRK1Q38SD2 KRT18P24-201ENST00000344739 1156 ntBASIC23.57■■□□□ 1.36
LRRK1Q38SD2 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LRRK1Q38SD2 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LRRK1Q38SD2 GUSBP5-201ENST00000418136 578 ntBASIC23.57■■□□□ 1.36
LRRK1Q38SD2 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.57■■□□□ 1.36
LRRK1Q38SD2 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.57■■□□□ 1.36
LRRK1Q38SD2 Z92544.1-202ENST00000571933 1220 ntBASIC23.57■■□□□ 1.36
LRRK1Q38SD2 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
LRRK1Q38SD2 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.56■■□□□ 1.36
LRRK1Q38SD2 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 THA1P-201ENST00000590384 1145 ntBASIC23.55■■□□□ 1.36
LRRK1Q38SD2 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LRRK1Q38SD2 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.54■■□□□ 1.36
LRRK1Q38SD2 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.54■■□□□ 1.36
LRRK1Q38SD2 AC011551.1-201ENST00000614101 683 ntBASIC23.54■■□□□ 1.36
LRRK1Q38SD2 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LRRK1Q38SD2 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.54■■□□□ 1.36
LRRK1Q38SD2 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.54■■□□□ 1.36
LRRK1Q38SD2 BX664725.1-201ENST00000438252 379 ntBASIC23.54■■□□□ 1.36
LRRK1Q38SD2 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.54■■□□□ 1.36
LRRK1Q38SD2 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.54■■□□□ 1.36
LRRK1Q38SD2 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
LRRK1Q38SD2 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
LRRK1Q38SD2 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
LRRK1Q38SD2 AL592295.1-201ENST00000400984 884 ntBASIC23.53■■□□□ 1.36
LRRK1Q38SD2 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
LRRK1Q38SD2 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
LRRK1Q38SD2 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
LRRK1Q38SD2 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
LRRK1Q38SD2 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
LRRK1Q38SD2 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LRRK1Q38SD2 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LRRK1Q38SD2 AC120024.1-201ENST00000562672 995 ntBASIC23.52■■□□□ 1.36
LRRK1Q38SD2 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
LRRK1Q38SD2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.51■■□□□ 1.35
LRRK1Q38SD2 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.51■■□□□ 1.35
LRRK1Q38SD2 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LRRK1Q38SD2 FOXO3B-201ENST00000395675 1928 ntBASIC23.51■■□□□ 1.35
LRRK1Q38SD2 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
LRRK1Q38SD2 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LRRK1Q38SD2 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.5■■□□□ 1.35
LRRK1Q38SD2 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
LRRK1Q38SD2 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LRRK1Q38SD2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LRRK1Q38SD2 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.5■■□□□ 1.35
LRRK1Q38SD2 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.49■■□□□ 1.35
LRRK1Q38SD2 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.49■■□□□ 1.35
LRRK1Q38SD2 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRRK1Q38SD2 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRRK1Q38SD2 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.49■■□□□ 1.35
LRRK1Q38SD2 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRRK1Q38SD2 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.49■■□□□ 1.35
LRRK1Q38SD2 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
LRRK1Q38SD2 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.48■■□□□ 1.35
LRRK1Q38SD2 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.48■■□□□ 1.35
LRRK1Q38SD2 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
LRRK1Q38SD2 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LRRK1Q38SD2 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LRRK1Q38SD2 AC137630.3-201ENST00000607245 391 ntBASIC23.47■■□□□ 1.35
LRRK1Q38SD2 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LRRK1Q38SD2 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
LRRK1Q38SD2 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRRK1Q38SD2 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRRK1Q38SD2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.47■■□□□ 1.35
LRRK1Q38SD2 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
LRRK1Q38SD2 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
LRRK1Q38SD2 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.46■■□□□ 1.35
LRRK1Q38SD2 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LRRK1Q38SD2 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LRRK1Q38SD2 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LRRK1Q38SD2 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
LRRK1Q38SD2 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.45■■□□□ 1.34
LRRK1Q38SD2 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
LRRK1Q38SD2 AC239859.2-201ENST00000444165 318 ntBASIC23.45■■□□□ 1.34
LRRK1Q38SD2 MIR4787-201ENST00000607364 84 ntBASIC23.45■■□□□ 1.34
LRRK1Q38SD2 AC145676.1-201ENST00000514988 2004 ntBASIC23.45■■□□□ 1.34
LRRK1Q38SD2 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRRK1Q38SD2 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRRK1Q38SD2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.44■■□□□ 1.34
LRRK1Q38SD2 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
LRRK1Q38SD2 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.43■■□□□ 1.34
LRRK1Q38SD2 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
LRRK1Q38SD2 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.43■■□□□ 1.34
LRRK1Q38SD2 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRK1Q38SD2 AF131216.4-201ENST00000638924 1588 ntBASIC23.43■■□□□ 1.34
LRRK1Q38SD2 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.42■■□□□ 1.34
LRRK1Q38SD2 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRRK1Q38SD2 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.42■■□□□ 1.34
LRRK1Q38SD2 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.42■■□□□ 1.34
LRRK1Q38SD2 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRRK1Q38SD2 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.42■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms