Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP28Q9H239 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP28Q9H239 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.75■□□□□ 0.91
MMP28Q9H239 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
MMP28Q9H239 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP28Q9H239 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP28Q9H239 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
MMP28Q9H239 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.74■□□□□ 0.91
MMP28Q9H239 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.74■□□□□ 0.91
MMP28Q9H239 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
MMP28Q9H239 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP28Q9H239 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP28Q9H239 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
MMP28Q9H239 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MMP28Q9H239 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
MMP28Q9H239 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.73■□□□□ 0.91
MMP28Q9H239 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP28Q9H239 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.73■□□□□ 0.91
MMP28Q9H239 AC096887.2-201ENST00000623443 1957 ntBASIC20.73■□□□□ 0.91
MMP28Q9H239 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP28Q9H239 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
MMP28Q9H239 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MMP28Q9H239 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
MMP28Q9H239 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.72■□□□□ 0.91
MMP28Q9H239 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MMP28Q9H239 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
MMP28Q9H239 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
MMP28Q9H239 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.71■□□□□ 0.91
MMP28Q9H239 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MMP28Q9H239 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
MMP28Q9H239 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
MMP28Q9H239 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MMP28Q9H239 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MMP28Q9H239 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MMP28Q9H239 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MMP28Q9H239 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.7■□□□□ 0.9
MMP28Q9H239 C9orf163-202ENST00000624034 2573 ntBASIC20.7■□□□□ 0.9
MMP28Q9H239 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MMP28Q9H239 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MMP28Q9H239 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MMP28Q9H239 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.7■□□□□ 0.9
MMP28Q9H239 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.69■□□□□ 0.9
MMP28Q9H239 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
MMP28Q9H239 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
MMP28Q9H239 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
MMP28Q9H239 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MMP28Q9H239 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.68■□□□□ 0.9
MMP28Q9H239 DUX4L11-201ENST00000611504 1267 ntBASIC20.68■□□□□ 0.9
MMP28Q9H239 DUX4L12-201ENST00000614593 1267 ntBASIC20.68■□□□□ 0.9
MMP28Q9H239 DUX4L14-201ENST00000621227 1267 ntBASIC20.68■□□□□ 0.9
MMP28Q9H239 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.68■□□□□ 0.9
MMP28Q9H239 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
MMP28Q9H239 AC110285.7-201ENST00000624417 1536 ntBASIC20.68■□□□□ 0.9
MMP28Q9H239 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.67■□□□□ 0.9
MMP28Q9H239 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
MMP28Q9H239 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MMP28Q9H239 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.67■□□□□ 0.9
MMP28Q9H239 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.67■□□□□ 0.9
MMP28Q9H239 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MMP28Q9H239 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MMP28Q9H239 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MMP28Q9H239 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.66■□□□□ 0.9
MMP28Q9H239 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L13-201ENST00000554103 1267 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L15-201ENST00000611059 1267 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L23-201ENST00000615195 1269 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L24-201ENST00000617576 1269 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L22-201ENST00000618238 1269 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L20-201ENST00000619712 1269 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L21-201ENST00000622058 1269 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L10-201ENST00000622460 1267 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DUX4L25-201ENST00000624915 1269 ntBASIC20.66■□□□□ 0.9
MMP28Q9H239 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MMP28Q9H239 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.66■□□□□ 0.9
MMP28Q9H239 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
MMP28Q9H239 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MMP28Q9H239 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
MMP28Q9H239 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.65■□□□□ 0.9
MMP28Q9H239 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.65■□□□□ 0.9
MMP28Q9H239 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.65■□□□□ 0.9
MMP28Q9H239 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.65■□□□□ 0.9
MMP28Q9H239 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
MMP28Q9H239 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
MMP28Q9H239 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MMP28Q9H239 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.64■□□□□ 0.9
MMP28Q9H239 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MMP28Q9H239 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MMP28Q9H239 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MMP28Q9H239 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MMP28Q9H239 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms