Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 MDM31YHR194W 1740 nt5.48□□□□□ -1.53
CUP9P41817 ISN1YOR155C 1353 nt5.48□□□□□ -1.53
CUP9P41817 DON1YDR273W 1098 nt5.48□□□□□ -1.53
CUP9P41817 SPO7YAL009W 780 nt5.48□□□□□ -1.53
CUP9P41817 DPH5YLR172C 903 nt5.48□□□□□ -1.53
CUP9P41817 HAL5YJL165C 2568 nt5.48□□□□□ -1.53
CUP9P41817 HDA1YNL021W 2121 nt5.47□□□□□ -1.53
CUP9P41817 SKI2YLR398C 3864 nt5.47□□□□□ -1.53
CUP9P41817 WHI2YOR043W 1461 nt5.47□□□□□ -1.53
CUP9P41817 MTC2YKL098W 1074 nt5.47□□□□□ -1.53
CUP9P41817 YML012C-AYML012C-A 378 nt5.47□□□□□ -1.53
CUP9P41817 CIN4YMR138W 576 nt5.47□□□□□ -1.53
CUP9P41817 YCK1YHR135C 1617 nt5.47□□□□□ -1.53
CUP9P41817 PXL1YKR090W 2121 nt5.47□□□□□ -1.53
CUP9P41817 CRP1YHR146W 1398 nt5.46□□□□□ -1.54
CUP9P41817 GTT3YEL017W 1014 nt5.46□□□□□ -1.54
CUP9P41817 TMT1YER175C 900 nt5.46□□□□□ -1.54
CUP9P41817 YHR070C-AYHR070C-A 411 nt5.46□□□□□ -1.54
CUP9P41817 DMA1YHR115C 1251 nt5.46□□□□□ -1.54
CUP9P41817 PYC2YBR218C 3543 nt5.45□□□□□ -1.54
CUP9P41817 MGM101YJR144W 810 nt5.45□□□□□ -1.54
CUP9P41817 RPL21AYBR191W 483 nt5.45□□□□□ -1.54
CUP9P41817 GPA1YHR005C 1419 nt5.45□□□□□ -1.54
CUP9P41817 AIM3YBR108W 2844 nt5.44□□□□□ -1.54
CUP9P41817 PYK2YOR347C 1521 nt5.44□□□□□ -1.54
CUP9P41817 COX20YDR231C 618 nt5.44□□□□□ -1.54
CUP9P41817 HRQ1YDR291W 3234 nt5.44□□□□□ -1.54
CUP9P41817 HAP3YBL021C 435 nt5.44□□□□□ -1.54
CUP9P41817 YPR114WYPR114W 948 nt5.44□□□□□ -1.54
CUP9P41817 RSC30YHR056C 2652 nt5.43□□□□□ -1.54
CUP9P41817 RPN11YFR004W 921 nt5.43□□□□□ -1.54
CUP9P41817 BCY1YIL033C 1251 nt5.43□□□□□ -1.54
CUP9P41817 ATG12YBR217W 561 nt5.43□□□□□ -1.54
CUP9P41817 TPO3YPR156C 1869 nt5.43□□□□□ -1.54
CUP9P41817 COR1YBL045C 1374 nt5.42□□□□□ -1.54
CUP9P41817 RAD24YER173W 1980 nt5.42□□□□□ -1.54
CUP9P41817 ISC1YER019W 1434 nt5.42□□□□□ -1.54
CUP9P41817 YDL022C-AYDL022C-A 249 nt5.42□□□□□ -1.54
CUP9P41817 YGL235WYGL235W 537 nt5.42□□□□□ -1.54
CUP9P41817 ERP2YAL007C 648 nt5.42□□□□□ -1.54
CUP9P41817 YUR1YJL139C 1287 nt5.42□□□□□ -1.54
CUP9P41817 YHM2YMR241W 945 nt5.42□□□□□ -1.54
CUP9P41817 SNO4YMR322C 714 nt5.42□□□□□ -1.54
CUP9P41817 HSP33YOR391C 714 nt5.42□□□□□ -1.54
CUP9P41817 HSP32YPL280W 714 nt5.42□□□□□ -1.54
CUP9P41817 PGM1YKL127W 1713 nt5.42□□□□□ -1.54
CUP9P41817 PUF3YLL013C 2640 nt5.41□□□□□ -1.54
CUP9P41817 CBP4YGR174C 513 nt5.41□□□□□ -1.54
CUP9P41817 AAD15YOL165C 432 nt5.41□□□□□ -1.54
CUP9P41817 MRK1YDL079C 1506 nt5.41□□□□□ -1.54
CUP9P41817 CDC19YAL038W 1503 nt5.41□□□□□ -1.54
CUP9P41817 HST3YOR025W 1344 nt5.41□□□□□ -1.54
CUP9P41817 YTP1YNL237W 1380 nt5.41□□□□□ -1.54
CUP9P41817 AFG1YEL052W 1530 nt5.4□□□□□ -1.54
CUP9P41817 VPS61YDR136C 573 nt5.4□□□□□ -1.54
CUP9P41817 BSC4YNL269W 396 nt5.4□□□□□ -1.54
CUP9P41817 MOD5YOR274W 1287 nt5.4□□□□□ -1.54
CUP9P41817 KNS1YLL019C 2214 nt5.39□□□□□ -1.55
CUP9P41817 GPB2YAL056W 2643 nt5.39□□□□□ -1.55
CUP9P41817 HXT2YMR011W 1626 nt5.39□□□□□ -1.55
CUP9P41817 YDL119CYDL119C 924 nt5.39□□□□□ -1.55
CUP9P41817 GLN1YPR035W 1113 nt5.39□□□□□ -1.55
CUP9P41817 ICS3YJL077C 396 nt5.38□□□□□ -1.55
CUP9P41817 RPE1YJL121C 717 nt5.38□□□□□ -1.55
CUP9P41817 DUS4YLR405W 1104 nt5.38□□□□□ -1.55
CUP9P41817 YMR119W-AYMR119W-A 375 nt5.38□□□□□ -1.55
CUP9P41817 MRPS12YNR036C 462 nt5.38□□□□□ -1.55
CUP9P41817 DAP1YPL170W 459 nt5.38□□□□□ -1.55
CUP9P41817 GUD1YDL238C 1470 nt5.38□□□□□ -1.55
CUP9P41817 RPL10YLR075W 666 nt5.37□□□□□ -1.55
CUP9P41817 SSP120YLR250W 705 nt5.37□□□□□ -1.55
CUP9P41817 UBC11YOR339C 471 nt5.37□□□□□ -1.55
CUP9P41817 AVT4YNL101W 2142 nt5.36□□□□□ -1.55
CUP9P41817 HGH1YGR187C 1185 nt5.36□□□□□ -1.55
CUP9P41817 tR(ACG)DtR(ACG)D 73 nt5.36□□□□□ -1.55
CUP9P41817 tR(ACG)EtR(ACG)E 73 nt5.36□□□□□ -1.55
CUP9P41817 tR(ACG)KtR(ACG)K 73 nt5.36□□□□□ -1.55
CUP9P41817 tR(ACG)LtR(ACG)L 73 nt5.36□□□□□ -1.55
CUP9P41817 tR(ACG)OtR(ACG)O 73 nt5.36□□□□□ -1.55
CUP9P41817 COA1YIL157C 594 nt5.36□□□□□ -1.55
CUP9P41817 RPR2YIR015W 435 nt5.36□□□□□ -1.55
CUP9P41817 CCP1YKR066C 1086 nt5.36□□□□□ -1.55
CUP9P41817 ATG4YNL223W 1485 nt5.36□□□□□ -1.55
CUP9P41817 BRL1YHR036W 1416 nt5.35□□□□□ -1.55
CUP9P41817 MDH3YDL078C 1032 nt5.35□□□□□ -1.55
CUP9P41817 YDR278CYDR278C 318 nt5.35□□□□□ -1.55
CUP9P41817 YBR144CYBR144C 315 nt5.35□□□□□ -1.55
CUP9P41817 PFK2YMR205C 2880 nt5.35□□□□□ -1.55
CUP9P41817 CBK1YNL161W 2271 nt5.35□□□□□ -1.55
CUP9P41817 GYP8YFL027C 1494 nt5.34□□□□□ -1.55
CUP9P41817 KKQ8YKL168C 2175 nt5.34□□□□□ -1.55
CUP9P41817 RHB1YCR027C 630 nt5.34□□□□□ -1.55
CUP9P41817 YIR042CYIR042C 711 nt5.34□□□□□ -1.55
CUP9P41817 MRPL22YNL177C 930 nt5.34□□□□□ -1.55
CUP9P41817 FET4YMR319C 1659 nt5.34□□□□□ -1.56
CUP9P41817 YBR284WYBR284W 2394 nt5.33□□□□□ -1.56
CUP9P41817 RPT3YDR394W 1287 nt5.33□□□□□ -1.56
CUP9P41817 SUP19tS(UGA)E 82 nt5.33□□□□□ -1.56
CUP9P41817 SUP17tS(UGA)I 82 nt5.33□□□□□ -1.56
CUP9P41817 SUP16tS(UGA)P 82 nt5.33□□□□□ -1.56
Retrieved 100 of 7,029 protein–RNA pairs in 39.6 ms