Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A5A8TX70 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A5A8TX70 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.22■□□□□ 0.67
COL6A5A8TX70 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A5A8TX70 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
COL6A5A8TX70 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.22■□□□□ 0.67
COL6A5A8TX70 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A5A8TX70 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A5A8TX70 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A5A8TX70 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A5A8TX70 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.21■□□□□ 0.67
COL6A5A8TX70 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A5A8TX70 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.66
COL6A5A8TX70 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.21■□□□□ 0.66
COL6A5A8TX70 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A5A8TX70 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL6A5A8TX70 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A5A8TX70 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A5A8TX70 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A5A8TX70 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A5A8TX70 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.19■□□□□ 0.66
COL6A5A8TX70 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A5A8TX70 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A5A8TX70 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A5A8TX70 MIR4281-201ENST00000580852 62 ntBASIC19.19■□□□□ 0.66
COL6A5A8TX70 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A5A8TX70 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.18■□□□□ 0.66
COL6A5A8TX70 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.18■□□□□ 0.66
COL6A5A8TX70 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A5A8TX70 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A5A8TX70 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A5A8TX70 AC120024.1-201ENST00000562672 995 ntBASIC19.17■□□□□ 0.66
COL6A5A8TX70 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A5A8TX70 ID1-201ENST00000376105 1233 ntBASIC19.17■□□□□ 0.66
COL6A5A8TX70 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A5A8TX70 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A5A8TX70 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A5A8TX70 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
COL6A5A8TX70 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.16■□□□□ 0.66
COL6A5A8TX70 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A5A8TX70 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A5A8TX70 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A5A8TX70 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A5A8TX70 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
COL6A5A8TX70 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A5A8TX70 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.16■□□□□ 0.66
COL6A5A8TX70 AC100797.4-201ENST00000631653 1827 ntBASIC19.16■□□□□ 0.66
COL6A5A8TX70 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A5A8TX70 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A5A8TX70 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
COL6A5A8TX70 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A5A8TX70 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A5A8TX70 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A5A8TX70 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.14■□□□□ 0.65
COL6A5A8TX70 AC024257.2-201ENST00000549699 147 ntBASIC19.14■□□□□ 0.65
COL6A5A8TX70 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
COL6A5A8TX70 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A5A8TX70 AL135925.1-201ENST00000605920 1701 ntBASIC19.14■□□□□ 0.65
COL6A5A8TX70 MTDHP2-201ENST00000601468 714 ntBASIC19.14■□□□□ 0.65
COL6A5A8TX70 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.13■□□□□ 0.65
COL6A5A8TX70 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.13■□□□□ 0.65
COL6A5A8TX70 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A5A8TX70 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.13■□□□□ 0.65
COL6A5A8TX70 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A5A8TX70 AF213884.3-201ENST00000563833 479 ntBASIC19.12■□□□□ 0.65
COL6A5A8TX70 UNC93B3-201ENST00000308076 687 ntBASIC19.12■□□□□ 0.65
COL6A5A8TX70 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
COL6A5A8TX70 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
COL6A5A8TX70 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.12■□□□□ 0.65
COL6A5A8TX70 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A5A8TX70 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
COL6A5A8TX70 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A5A8TX70 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL6A5A8TX70 AL359504.2-201ENST00000605506 1601 ntBASIC19.11■□□□□ 0.65
COL6A5A8TX70 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL6A5A8TX70 MIR939-201ENST00000401314 82 ntBASIC19.1■□□□□ 0.65
COL6A5A8TX70 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.1■□□□□ 0.65
COL6A5A8TX70 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.1■□□□□ 0.65
COL6A5A8TX70 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.1■□□□□ 0.65
COL6A5A8TX70 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.1■□□□□ 0.65
COL6A5A8TX70 AL136967.2-201ENST00000623968 743 ntBASIC19.1■□□□□ 0.65
COL6A5A8TX70 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.1■□□□□ 0.65
COL6A5A8TX70 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A5A8TX70 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COL6A5A8TX70 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A5A8TX70 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL6A5A8TX70 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL6A5A8TX70 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.09■□□□□ 0.65
COL6A5A8TX70 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL6A5A8TX70 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
COL6A5A8TX70 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL6A5A8TX70 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL6A5A8TX70 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
COL6A5A8TX70 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.08■□□□□ 0.64
COL6A5A8TX70 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL6A5A8TX70 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.07■□□□□ 0.64
COL6A5A8TX70 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL6A5A8TX70 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.07■□□□□ 0.64
COL6A5A8TX70 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.07■□□□□ 0.64
COL6A5A8TX70 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms