Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 AC239859.2-201ENST00000444165 318 ntBASIC31.49■■■□□ 2.63
PTCD1O75127 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.49■■■□□ 2.63
PTCD1O75127 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
PTCD1O75127 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
PTCD1O75127 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC31.49■■■□□ 2.63
PTCD1O75127 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
PTCD1O75127 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
PTCD1O75127 AL356441.2-201ENST00000443009 864 ntBASIC31.48■■■□□ 2.63
PTCD1O75127 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
PTCD1O75127 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.47■■■□□ 2.63
PTCD1O75127 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
PTCD1O75127 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.47■■■□□ 2.63
PTCD1O75127 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
PTCD1O75127 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.46■■■□□ 2.63
PTCD1O75127 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
PTCD1O75127 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.46■■■□□ 2.63
PTCD1O75127 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
PTCD1O75127 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.46■■■□□ 2.63
PTCD1O75127 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
PTCD1O75127 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
PTCD1O75127 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.62
PTCD1O75127 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC31.45■■■□□ 2.62
PTCD1O75127 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.45■■■□□ 2.62
PTCD1O75127 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
PTCD1O75127 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
PTCD1O75127 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
PTCD1O75127 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
PTCD1O75127 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC31.43■■■□□ 2.62
PTCD1O75127 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
PTCD1O75127 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC31.43■■■□□ 2.62
PTCD1O75127 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
PTCD1O75127 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC31.42■■■□□ 2.62
PTCD1O75127 TK2-216ENST00000564917 1156 ntTSL 3 BASIC31.42■■■□□ 2.62
PTCD1O75127 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
PTCD1O75127 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
PTCD1O75127 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC31.41■■■□□ 2.62
PTCD1O75127 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
PTCD1O75127 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
PTCD1O75127 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
PTCD1O75127 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC31.4■■■□□ 2.62
PTCD1O75127 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.4■■■□□ 2.62
PTCD1O75127 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
PTCD1O75127 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.4■■■□□ 2.62
PTCD1O75127 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
PTCD1O75127 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
PTCD1O75127 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
PTCD1O75127 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
PTCD1O75127 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC31.39■■■□□ 2.62
PTCD1O75127 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.39■■■□□ 2.62
PTCD1O75127 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.39■■■□□ 2.62
PTCD1O75127 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
PTCD1O75127 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
PTCD1O75127 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
PTCD1O75127 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.37■■■□□ 2.61
PTCD1O75127 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC31.37■■■□□ 2.61
PTCD1O75127 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PTCD1O75127 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
PTCD1O75127 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC31.36■■■□□ 2.61
PTCD1O75127 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
PTCD1O75127 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PTCD1O75127 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
PTCD1O75127 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PTCD1O75127 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.36■■■□□ 2.61
PTCD1O75127 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
PTCD1O75127 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
PTCD1O75127 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
PTCD1O75127 AC019069.1-201ENST00000610008 1333 ntBASIC31.34■■■□□ 2.61
PTCD1O75127 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
PTCD1O75127 LINC01003-201ENST00000564834 1764 ntBASIC31.33■■■□□ 2.61
PTCD1O75127 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PTCD1O75127 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.32■■■□□ 2.6
PTCD1O75127 CREM-229ENST00000474362 1030 ntTSL 2 BASIC31.32■■■□□ 2.6
PTCD1O75127 Z92544.1-202ENST00000571933 1220 ntBASIC31.32■■■□□ 2.6
PTCD1O75127 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.32■■■□□ 2.6
PTCD1O75127 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
PTCD1O75127 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
PTCD1O75127 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
PTCD1O75127 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
PTCD1O75127 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
PTCD1O75127 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
PTCD1O75127 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
PTCD1O75127 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
PTCD1O75127 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
PTCD1O75127 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
PTCD1O75127 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
PTCD1O75127 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
PTCD1O75127 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
PTCD1O75127 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
PTCD1O75127 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
PTCD1O75127 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
PTCD1O75127 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC31.29■■■□□ 2.6
PTCD1O75127 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
PTCD1O75127 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC31.28■■■□□ 2.6
PTCD1O75127 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.28■■■□□ 2.6
PTCD1O75127 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
PTCD1O75127 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
PTCD1O75127 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
PTCD1O75127 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
PTCD1O75127 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
PTCD1O75127 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC31.27■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms