Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NKX6-3A6NJ46 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX6-3A6NJ46 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.28■□□□□ 0.84
NKX6-3A6NJ46 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NKX6-3A6NJ46 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
NKX6-3A6NJ46 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.28■□□□□ 0.84
NKX6-3A6NJ46 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX6-3A6NJ46 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
NKX6-3A6NJ46 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NKX6-3A6NJ46 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NKX6-3A6NJ46 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NKX6-3A6NJ46 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.26■□□□□ 0.83
NKX6-3A6NJ46 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NKX6-3A6NJ46 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.25■□□□□ 0.83
NKX6-3A6NJ46 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 ABHD17AP5-201ENST00000580133 923 ntBASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.24■□□□□ 0.83
NKX6-3A6NJ46 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX6-3A6NJ46 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
NKX6-3A6NJ46 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX6-3A6NJ46 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX6-3A6NJ46 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX6-3A6NJ46 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
NKX6-3A6NJ46 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NKX6-3A6NJ46 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.22■□□□□ 0.83
NKX6-3A6NJ46 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX6-3A6NJ46 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NKX6-3A6NJ46 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX6-3A6NJ46 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX6-3A6NJ46 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.21■□□□□ 0.83
NKX6-3A6NJ46 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
NKX6-3A6NJ46 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX6-3A6NJ46 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.2■□□□□ 0.82
NKX6-3A6NJ46 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX6-3A6NJ46 AC026202.3-201ENST00000600805 1127 ntBASIC20.2■□□□□ 0.82
NKX6-3A6NJ46 AC133552.2-201ENST00000619106 1032 ntBASIC20.2■□□□□ 0.82
NKX6-3A6NJ46 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX6-3A6NJ46 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
NKX6-3A6NJ46 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX6-3A6NJ46 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX6-3A6NJ46 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 AC009831.1-201ENST00000580420 1582 ntBASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 AC092803.2-201ENST00000564287 1899 ntBASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.19■□□□□ 0.82
NKX6-3A6NJ46 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX6-3A6NJ46 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX6-3A6NJ46 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX6-3A6NJ46 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX6-3A6NJ46 RAP2CP1-202ENST00000605179 643 ntBASIC20.18■□□□□ 0.82
NKX6-3A6NJ46 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX6-3A6NJ46 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX6-3A6NJ46 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.18■□□□□ 0.82
NKX6-3A6NJ46 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NKX6-3A6NJ46 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX6-3A6NJ46 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX6-3A6NJ46 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX6-3A6NJ46 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.17■□□□□ 0.82
NKX6-3A6NJ46 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
NKX6-3A6NJ46 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms