Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.43■■■□□ 2.62
USP42Q9H9J4 DRD5P2-201ENST00000421395 2012 ntBASIC31.42■■■□□ 2.62
USP42Q9H9J4 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
USP42Q9H9J4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC31.42■■■□□ 2.62
USP42Q9H9J4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
USP42Q9H9J4 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.41■■■□□ 2.62
USP42Q9H9J4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC31.4■■■□□ 2.62
USP42Q9H9J4 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP42Q9H9J4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP42Q9H9J4 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
USP42Q9H9J4 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC31.39■■■□□ 2.62
USP42Q9H9J4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP42Q9H9J4 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
USP42Q9H9J4 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
USP42Q9H9J4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
USP42Q9H9J4 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
USP42Q9H9J4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.38■■■□□ 2.61
USP42Q9H9J4 AL031848.2-201ENST00000607670 837 ntBASIC31.38■■■□□ 2.61
USP42Q9H9J4 AL359504.2-201ENST00000605506 1601 ntBASIC31.38■■■□□ 2.61
USP42Q9H9J4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP42Q9H9J4 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
USP42Q9H9J4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP42Q9H9J4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP42Q9H9J4 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
USP42Q9H9J4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC31.36■■■□□ 2.61
USP42Q9H9J4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP42Q9H9J4 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP42Q9H9J4 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP42Q9H9J4 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP42Q9H9J4 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP42Q9H9J4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
USP42Q9H9J4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP42Q9H9J4 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.35■■■□□ 2.61
USP42Q9H9J4 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
USP42Q9H9J4 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
USP42Q9H9J4 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
USP42Q9H9J4 AL356441.2-201ENST00000443009 864 ntBASIC31.34■■■□□ 2.61
USP42Q9H9J4 MTX2-204ENST00000443241 799 ntTSL 3 BASIC31.34■■■□□ 2.61
USP42Q9H9J4 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC31.34■■■□□ 2.61
USP42Q9H9J4 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.33■■■□□ 2.61
USP42Q9H9J4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.33■■■□□ 2.61
USP42Q9H9J4 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
USP42Q9H9J4 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USP42Q9H9J4 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USP42Q9H9J4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC31.32■■■□□ 2.6
USP42Q9H9J4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.32■■■□□ 2.6
USP42Q9H9J4 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
USP42Q9H9J4 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
USP42Q9H9J4 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP42Q9H9J4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
USP42Q9H9J4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
USP42Q9H9J4 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
USP42Q9H9J4 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP42Q9H9J4 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP42Q9H9J4 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP42Q9H9J4 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP42Q9H9J4 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP42Q9H9J4 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USP42Q9H9J4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
USP42Q9H9J4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
USP42Q9H9J4 AC019171.1-201ENST00000601251 1056 ntBASIC31.28■■■□□ 2.6
USP42Q9H9J4 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.28■■■□□ 2.6
USP42Q9H9J4 PROC-203ENST00000409048 1586 ntTSL 5 BASIC31.28■■■□□ 2.6
USP42Q9H9J4 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
USP42Q9H9J4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.27■■■□□ 2.6
USP42Q9H9J4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.27■■■□□ 2.6
USP42Q9H9J4 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
USP42Q9H9J4 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.27■■■□□ 2.6
USP42Q9H9J4 AC142086.6-201ENST00000621154 1765 ntBASIC31.27■■■□□ 2.6
USP42Q9H9J4 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
USP42Q9H9J4 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
USP42Q9H9J4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP42Q9H9J4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.26■■■□□ 2.6
USP42Q9H9J4 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
USP42Q9H9J4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.59
USP42Q9H9J4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.26■■■□□ 2.59
USP42Q9H9J4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP42Q9H9J4 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP42Q9H9J4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
USP42Q9H9J4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC31.24■■■□□ 2.59
USP42Q9H9J4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC31.24■■■□□ 2.59
USP42Q9H9J4 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC31.24■■■□□ 2.59
USP42Q9H9J4 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC31.24■■■□□ 2.59
USP42Q9H9J4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP42Q9H9J4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC31.22■■■□□ 2.59
USP42Q9H9J4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
USP42Q9H9J4 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
USP42Q9H9J4 AC087393.1-201ENST00000582896 145 ntBASIC31.22■■■□□ 2.59
USP42Q9H9J4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.22■■■□□ 2.59
USP42Q9H9J4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
USP42Q9H9J4 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP42Q9H9J4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC31.21■■■□□ 2.59
USP42Q9H9J4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.21■■■□□ 2.59
USP42Q9H9J4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP42Q9H9J4 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP42Q9H9J4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP42Q9H9J4 RNF146-205ENST00000477776 762 ntTSL 3 BASIC31.21■■■□□ 2.59
USP42Q9H9J4 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
USP42Q9H9J4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.2■■■□□ 2.59
USP42Q9H9J4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC31.2■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms