Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL6A3P12111 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
COL6A3P12111 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.49■■□□□ 1.83
COL6A3P12111 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL6A3P12111 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
COL6A3P12111 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
COL6A3P12111 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL6A3P12111 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL6A3P12111 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.47■■□□□ 1.83
COL6A3P12111 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC26.46■■□□□ 1.83
COL6A3P12111 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL6A3P12111 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL6A3P12111 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.46■■□□□ 1.83
COL6A3P12111 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.46■■□□□ 1.83
COL6A3P12111 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL6A3P12111 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL6A3P12111 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL6A3P12111 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
COL6A3P12111 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.44■■□□□ 1.82
COL6A3P12111 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL6A3P12111 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL6A3P12111 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL6A3P12111 AL359258.2-201ENST00000564063 1566 ntBASIC26.44■■□□□ 1.82
COL6A3P12111 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.44■■□□□ 1.82
COL6A3P12111 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL6A3P12111 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.44■■□□□ 1.82
COL6A3P12111 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
COL6A3P12111 ESRRAP2-201ENST00000418437 1549 ntBASIC26.42■■□□□ 1.82
COL6A3P12111 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
COL6A3P12111 SUDS3P1-201ENST00000505831 966 ntBASIC26.41■■□□□ 1.82
COL6A3P12111 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.41■■□□□ 1.82
COL6A3P12111 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.41■■□□□ 1.82
COL6A3P12111 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
COL6A3P12111 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
COL6A3P12111 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.4■■□□□ 1.82
COL6A3P12111 DENND3-207ENST00000518347 850 ntTSL 2 BASIC26.4■■□□□ 1.82
COL6A3P12111 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.4■■□□□ 1.82
COL6A3P12111 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL6A3P12111 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
COL6A3P12111 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC26.39■■□□□ 1.82
COL6A3P12111 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.39■■□□□ 1.82
COL6A3P12111 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
COL6A3P12111 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.39■■□□□ 1.82
COL6A3P12111 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.39■■□□□ 1.82
COL6A3P12111 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.39■■□□□ 1.82
COL6A3P12111 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.38■■□□□ 1.81
COL6A3P12111 AL162430.1-201ENST00000480705 870 ntBASIC26.38■■□□□ 1.81
COL6A3P12111 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL6A3P12111 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.38■■□□□ 1.81
COL6A3P12111 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.38■■□□□ 1.81
COL6A3P12111 BX664725.1-201ENST00000438252 379 ntBASIC26.37■■□□□ 1.81
COL6A3P12111 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.37■■□□□ 1.81
COL6A3P12111 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.37■■□□□ 1.81
COL6A3P12111 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL6A3P12111 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL6A3P12111 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
COL6A3P12111 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.36■■□□□ 1.81
COL6A3P12111 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL6A3P12111 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
COL6A3P12111 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
COL6A3P12111 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL6A3P12111 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.35■■□□□ 1.81
COL6A3P12111 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.35■■□□□ 1.81
COL6A3P12111 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC26.35■■□□□ 1.81
COL6A3P12111 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL6A3P12111 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL6A3P12111 AC106739.1-201ENST00000617035 715 ntBASIC26.34■■□□□ 1.81
COL6A3P12111 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL6A3P12111 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL6A3P12111 MIR6821-201ENST00000617625 74 ntBASIC26.33■■□□□ 1.81
COL6A3P12111 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.33■■□□□ 1.81
COL6A3P12111 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL6A3P12111 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL6A3P12111 AL117332.1-201ENST00000622628 974 ntBASIC26.33■■□□□ 1.81
COL6A3P12111 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL6A3P12111 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL6A3P12111 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL6A3P12111 AL031432.3-201ENST00000607698 485 ntBASIC26.32■■□□□ 1.8
COL6A3P12111 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC26.32■■□□□ 1.8
COL6A3P12111 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL6A3P12111 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.31■■□□□ 1.8
COL6A3P12111 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL6A3P12111 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL6A3P12111 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.3■■□□□ 1.8
COL6A3P12111 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.3■■□□□ 1.8
COL6A3P12111 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC26.3■■□□□ 1.8
COL6A3P12111 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL6A3P12111 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.3■■□□□ 1.8
COL6A3P12111 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL6A3P12111 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL6A3P12111 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.3■■□□□ 1.8
COL6A3P12111 TSPY9P-201ENST00000440215 945 ntBASIC26.3■■□□□ 1.8
COL6A3P12111 TSPY11P-201ENST00000442607 1045 ntBASIC26.3■■□□□ 1.8
COL6A3P12111 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.3■■□□□ 1.8
COL6A3P12111 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.3■■□□□ 1.8
COL6A3P12111 AC097381.1-201ENST00000429019 1296 ntBASIC26.3■■□□□ 1.8
COL6A3P12111 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.29■■□□□ 1.8
COL6A3P12111 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC26.29■■□□□ 1.8
COL6A3P12111 RARRES2P11-201ENST00000635158 484 ntBASIC26.29■■□□□ 1.8
COL6A3P12111 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms