Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
NKX3-1Q99801 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NKX3-1Q99801 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.4■■□□□ 1.02
NKX3-1Q99801 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX3-1Q99801 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.4■■□□□ 1.02
NKX3-1Q99801 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.39■■□□□ 1.02
NKX3-1Q99801 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX3-1Q99801 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NKX3-1Q99801 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NKX3-1Q99801 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NKX3-1Q99801 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.38■■□□□ 1.01
NKX3-1Q99801 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NKX3-1Q99801 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
NKX3-1Q99801 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NKX3-1Q99801 AC092803.2-201ENST00000564287 1899 ntBASIC21.37■■□□□ 1.01
NKX3-1Q99801 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NKX3-1Q99801 AC110285.7-201ENST00000624417 1536 ntBASIC21.37■■□□□ 1.01
NKX3-1Q99801 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NKX3-1Q99801 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
NKX3-1Q99801 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NKX3-1Q99801 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
NKX3-1Q99801 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
NKX3-1Q99801 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NKX3-1Q99801 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NKX3-1Q99801 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NKX3-1Q99801 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NKX3-1Q99801 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NKX3-1Q99801 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX3-1Q99801 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX3-1Q99801 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
NKX3-1Q99801 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.34■■□□□ 1.01
NKX3-1Q99801 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NKX3-1Q99801 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.33■■□□□ 1.01
NKX3-1Q99801 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
NKX3-1Q99801 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
NKX3-1Q99801 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
NKX3-1Q99801 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.33■■□□□ 1
NKX3-1Q99801 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.32■■□□□ 1
NKX3-1Q99801 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.32■■□□□ 1
NKX3-1Q99801 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX3-1Q99801 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
NKX3-1Q99801 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX3-1Q99801 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX3-1Q99801 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.32■■□□□ 1
NKX3-1Q99801 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX3-1Q99801 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX3-1Q99801 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.31■■□□□ 1
NKX3-1Q99801 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.31■■□□□ 1
NKX3-1Q99801 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.31■■□□□ 1
NKX3-1Q99801 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX3-1Q99801 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NKX3-1Q99801 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
NKX3-1Q99801 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
NKX3-1Q99801 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NKX3-1Q99801 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.3■■□□□ 1
NKX3-1Q99801 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NKX3-1Q99801 DUSP8P4-201ENST00000399538 1761 ntBASIC21.29■■□□□ 1
NKX3-1Q99801 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.29■■□□□ 1
NKX3-1Q99801 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX3-1Q99801 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX3-1Q99801 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
NKX3-1Q99801 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX3-1Q99801 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
NKX3-1Q99801 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.28■■□□□ 1
NKX3-1Q99801 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.28■■□□□ 1
NKX3-1Q99801 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.27■■□□□ 1
NKX3-1Q99801 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NKX3-1Q99801 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NKX3-1Q99801 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NKX3-1Q99801 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.27■■□□□ 1
NKX3-1Q99801 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.27■■□□□ 1
NKX3-1Q99801 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NKX3-1Q99801 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.27■■□□□ 1
NKX3-1Q99801 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.27■■□□□ 1
NKX3-1Q99801 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.27■□□□□ 0.99
NKX3-1Q99801 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.26■□□□□ 0.99
NKX3-1Q99801 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.26■□□□□ 0.99
NKX3-1Q99801 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX3-1Q99801 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.25■□□□□ 0.99
NKX3-1Q99801 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NKX3-1Q99801 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
NKX3-1Q99801 ABHD17AP4-201ENST00000411545 909 ntBASIC21.25■□□□□ 0.99
NKX3-1Q99801 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.25■□□□□ 0.99
NKX3-1Q99801 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.25■□□□□ 0.99
NKX3-1Q99801 AC021231.2-201ENST00000594613 730 ntBASIC21.25■□□□□ 0.99
NKX3-1Q99801 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
NKX3-1Q99801 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.25■□□□□ 0.99
NKX3-1Q99801 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
NKX3-1Q99801 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX3-1Q99801 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX3-1Q99801 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.24■□□□□ 0.99
NKX3-1Q99801 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms