Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM1O15116 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.92■□□□□ 0.46
LSM1O15116 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
LSM1O15116 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.91■□□□□ 0.46
LSM1O15116 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.91■□□□□ 0.46
LSM1O15116 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
LSM1O15116 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.91■□□□□ 0.46
LSM1O15116 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.91■□□□□ 0.46
LSM1O15116 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.91■□□□□ 0.46
LSM1O15116 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 B3GAT3P1-201ENST00000471720 806 ntBASIC17.91■□□□□ 0.46
LSM1O15116 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.91■□□□□ 0.46
LSM1O15116 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.91■□□□□ 0.46
LSM1O15116 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.91■□□□□ 0.46
LSM1O15116 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LSM1O15116 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.91■□□□□ 0.46
LSM1O15116 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
LSM1O15116 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LSM1O15116 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.91■□□□□ 0.46
LSM1O15116 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.91■□□□□ 0.46
LSM1O15116 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.91■□□□□ 0.46
LSM1O15116 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.9■□□□□ 0.46
LSM1O15116 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.9■□□□□ 0.46
LSM1O15116 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
LSM1O15116 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.9■□□□□ 0.46
LSM1O15116 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.9■□□□□ 0.46
LSM1O15116 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.9■□□□□ 0.46
LSM1O15116 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 MIR6786-201ENST00000616843 113 ntBASIC17.9■□□□□ 0.46
LSM1O15116 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
LSM1O15116 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LSM1O15116 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
LSM1O15116 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
LSM1O15116 AL109659.2-201ENST00000606809 1674 ntBASIC17.9■□□□□ 0.46
LSM1O15116 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LSM1O15116 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
LSM1O15116 PCDHB18P-201ENST00000524813 2368 ntBASIC17.89■□□□□ 0.45
LSM1O15116 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 MESTP1-201ENST00000404287 994 ntBASIC17.89■□□□□ 0.45
LSM1O15116 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.89■□□□□ 0.45
LSM1O15116 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.89■□□□□ 0.45
LSM1O15116 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.89■□□□□ 0.45
LSM1O15116 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LSM1O15116 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LSM1O15116 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.88■□□□□ 0.45
LSM1O15116 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms