Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
LMX1BO60663 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.07■■□□□ 1.12
LMX1BO60663 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.07■■□□□ 1.12
LMX1BO60663 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
LMX1BO60663 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.06■■□□□ 1.12
LMX1BO60663 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LMX1BO60663 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC22.06■■□□□ 1.12
LMX1BO60663 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC22.06■■□□□ 1.12
LMX1BO60663 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LMX1BO60663 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LMX1BO60663 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
LMX1BO60663 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.06■■□□□ 1.12
LMX1BO60663 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.06■■□□□ 1.12
LMX1BO60663 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
LMX1BO60663 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
LMX1BO60663 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC22.05■■□□□ 1.12
LMX1BO60663 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
LMX1BO60663 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.04■■□□□ 1.12
LMX1BO60663 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
LMX1BO60663 DUX4L11-201ENST00000611504 1267 ntBASIC22.04■■□□□ 1.12
LMX1BO60663 DUX4L12-201ENST00000614593 1267 ntBASIC22.04■■□□□ 1.12
LMX1BO60663 LINC01971-201ENST00000617888 1048 ntBASIC22.04■■□□□ 1.12
LMX1BO60663 DUX4L14-201ENST00000621227 1267 ntBASIC22.04■■□□□ 1.12
LMX1BO60663 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.04■■□□□ 1.12
LMX1BO60663 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
LMX1BO60663 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
LMX1BO60663 AP002414.2-202ENST00000590929 1450 ntBASIC22.03■■□□□ 1.12
LMX1BO60663 AC135983.2-203ENST00000454486 1613 ntBASIC22.02■■□□□ 1.12
LMX1BO60663 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LMX1BO60663 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LMX1BO60663 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
LMX1BO60663 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
LMX1BO60663 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LMX1BO60663 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LMX1BO60663 WHAMMP2-203ENST00000563942 1603 ntBASIC22.02■■□□□ 1.11
LMX1BO60663 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.01■■□□□ 1.11
LMX1BO60663 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
LMX1BO60663 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.01■■□□□ 1.11
LMX1BO60663 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.01■■□□□ 1.11
LMX1BO60663 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
LMX1BO60663 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LMX1BO60663 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LMX1BO60663 HSD17B1P1-201ENST00000590052 955 ntBASIC21.99■■□□□ 1.11
LMX1BO60663 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.99■■□□□ 1.11
LMX1BO60663 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LMX1BO60663 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
LMX1BO60663 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.98■■□□□ 1.11
LMX1BO60663 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.98■■□□□ 1.11
LMX1BO60663 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.98■■□□□ 1.11
LMX1BO60663 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LMX1BO60663 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
LMX1BO60663 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LMX1BO60663 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
LMX1BO60663 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.97■■□□□ 1.11
LMX1BO60663 CR559946.2-201ENST00000623684 991 ntBASIC21.97■■□□□ 1.11
LMX1BO60663 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LMX1BO60663 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LMX1BO60663 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.97■■□□□ 1.11
LMX1BO60663 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.96■■□□□ 1.11
LMX1BO60663 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1BO60663 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.96■■□□□ 1.11
LMX1BO60663 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1BO60663 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1BO60663 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
LMX1BO60663 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LMX1BO60663 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
LMX1BO60663 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LMX1BO60663 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.94■■□□□ 1.1
LMX1BO60663 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1BO60663 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
LMX1BO60663 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1BO60663 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.94■■□□□ 1.1
LMX1BO60663 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1BO60663 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LMX1BO60663 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.93■■□□□ 1.1
LMX1BO60663 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
LMX1BO60663 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1BO60663 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1BO60663 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1BO60663 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.92■■□□□ 1.1
LMX1BO60663 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1BO60663 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1BO60663 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1BO60663 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1BO60663 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.91■■□□□ 1.1
LMX1BO60663 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1BO60663 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1BO60663 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.91■■□□□ 1.1
LMX1BO60663 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.9■■□□□ 1.1
LMX1BO60663 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
LMX1BO60663 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LMX1BO60663 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.9■■□□□ 1.1
LMX1BO60663 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.9■■□□□ 1.1
LMX1BO60663 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.9■■□□□ 1.1
LMX1BO60663 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.89■■□□□ 1.1
LMX1BO60663 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LMX1BO60663 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.89■■□□□ 1.09
LMX1BO60663 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
LMX1BO60663 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
LMX1BO60663 LINC00273-201ENST00000539813 1452 ntBASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms