RNA–Protein interactions for RNA: ENST00000641811.1

PHGDH-227, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 1,031 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-227ENST00000641811 NISCHQ9Y2I1 1504 aa42.18■■■■■ 4.34
PHGDH-227ENST00000641811 CCDC180Q9P1Z9 1646 aa37.47■■■■□ 3.59
PHGDH-227ENST00000641811 ABCC9O60706 1549 aa36.87■■■■□ 3.49
PHGDH-227ENST00000641811 DCAF8L2P0C7V8 631 aa35.39■■■■□ 3.26
PHGDH-227ENST00000641811 RB1CC1Q8TDY2 1594 aa35.34■■■■□ 3.25
PHGDH-227ENST00000641811 NACADO15069 1562 aa35.25■■■■□ 3.23
PHGDH-227ENST00000641811 ZCCHC6Q5VYS8 1495 aaKnown RBP35.1■■■■□ 3.21
PHGDH-227ENST00000641811 MYO15BQ96JP2 1530 aa34.99■■■■□ 3.19
PHGDH-227ENST00000641811 DCAF1Q9Y4B6 1507 aa34.83■■■■□ 3.17
PHGDH-227ENST00000641811 UNC13AQ9UPW8 1703 aa34.55■■■■□ 3.12
PHGDH-227ENST00000641811 PABPN1Q86U42 306 aaKnown RBP eCLIP34.49■■■■□ 3.11
PHGDH-227ENST00000641811 BICRAQ9NZM4 1560 aa34.32■■■■□ 3.09
PHGDH-227ENST00000641811 SCRIBQ14160 1630 aa34.29■■■■□ 3.08
PHGDH-227ENST00000641811 DNAJC5BQ9UF47 199 aa33.97■■■■□ 3.03
PHGDH-227ENST00000641811 SHROOM4Q9ULL8 1493 aa33.82■■■■□ 3.01
PHGDH-227ENST00000641811 EIF4G1Q04637 1599 aaKnown RBP33.4■■■□□ 2.94
PHGDH-227ENST00000641811 CC2D2AQ9P2K1 1620 aa33.3■■■□□ 2.92
PHGDH-227ENST00000641811 CECR2Q9BXF3 1484 aa33.1■■■□□ 2.89
PHGDH-227ENST00000641811 SMARCA4P51532 1647 aa32.74■■■□□ 2.83
PHGDH-227ENST00000641811 BAZ1AQ9NRL2 1556 aaPredicted RBP32.67■■■□□ 2.82
PHGDH-227ENST00000641811 ATAD2BQ9ULI0 1458 aa32.6■■■□□ 2.81
PHGDH-227ENST00000641811 NCAPD3P42695 1498 aa32.57■■■□□ 2.8
PHGDH-227ENST00000641811 MROH2BQ7Z745 1585 aa32.55■■■□□ 2.8
PHGDH-227ENST00000641811 SMARCA2P51531 1590 aa32.51■■■□□ 2.79
PHGDH-227ENST00000641811 PEG3Q9GZU2 1588 aa32.38■■■□□ 2.77
PHGDH-227ENST00000641811 HMGXB3Q12766 1538 aa32.37■■■□□ 2.77
PHGDH-227ENST00000641811 BAZ1BQ9UIG0 1483 aaKnown RBP32.32■■■□□ 2.76
PHGDH-227ENST00000641811 WIZO95785 1651 aa32.19■■■□□ 2.74
PHGDH-227ENST00000641811 RSF1Q96T23 1441 aaPredicted RBP32.15■■■□□ 2.74
PHGDH-227ENST00000641811 NESP48681 1621 aa31.89■■■□□ 2.7
PHGDH-227ENST00000641811 TOP2AP11388 1531 aaKnown RBP31.8■■■□□ 2.68
PHGDH-227ENST00000641811 ERCC6Q03468 1493 aa31.74■■■□□ 2.67
PHGDH-227ENST00000641811 LAMC3Q9Y6N6 1575 aa31.69■■■□□ 2.66
PHGDH-227ENST00000641811 CADPSQ9ULU8 1353 aa31.64■■■□□ 2.66
PHGDH-227ENST00000641811 PDS5BQ9NTI5 1447 aa31.5■■■□□ 2.63
PHGDH-227ENST00000641811 CCDC88BA6NC98 1476 aa31.47■■■□□ 2.63
PHGDH-227ENST00000641811 KIF21AQ7Z4S6 1674 aa31.46■■■□□ 2.63
PHGDH-227ENST00000641811 CFTRP13569 1480 aa31.42■■■□□ 2.62
PHGDH-227ENST00000641811 CUX2O14529 1486 aa31.38■■■□□ 2.61
PHGDH-227ENST00000641811 THOC2Q8NI27 1593 aaKnown RBP31.35■■■□□ 2.61
PHGDH-227ENST00000641811 SUPT5HO00267 1087 aaKnown RBP31.35■■■□□ 2.61
PHGDH-227ENST00000641811 FANCD2Q9BXW9 1451 aa31.28■■■□□ 2.6
PHGDH-227ENST00000641811 CEP164Q9UPV0 1460 aa31.23■■■□□ 2.59
PHGDH-227ENST00000641811 MRC2Q9UBG0 1479 aa31.21■■■□□ 2.59
PHGDH-227ENST00000641811 PRDM2Q13029 1718 aa31.11■■■□□ 2.57
PHGDH-227ENST00000641811 WDR62O43379 1518 aa31.08■■■□□ 2.57
PHGDH-227ENST00000641811 URB2Q14146 1524 aaKnown RBP30.99■■■□□ 2.55
PHGDH-227ENST00000641811 TOPBP1Q92547 1522 aa30.77■■■□□ 2.52
PHGDH-227ENST00000641811 DNMBPQ6XZF7 1577 aa30.71■■■□□ 2.51
PHGDH-227ENST00000641811 ABCC8Q09428 1581 aa30.69■■■□□ 2.5
PHGDH-227ENST00000641811 DNAJC5Q9H3Z4 198 aa30.59■■■□□ 2.49
PHGDH-227ENST00000641811 IFT140Q96RY7 1462 aa30.57■■■□□ 2.48
PHGDH-227ENST00000641811 CUX1P39880 1505 aa30.53■■■□□ 2.48
PHGDH-227ENST00000641811 ZNF608Q9ULD9 1512 aaPredicted RBP30.51■■■□□ 2.47
PHGDH-227ENST00000641811 POLA1P09884 1462 aaPredicted RBP30.5■■■□□ 2.47
PHGDH-227ENST00000641811 FGD5Q6ZNL6 1462 aa30.44■■■□□ 2.46
PHGDH-227ENST00000641811 TARBP1Q13395 1621 aaKnown RBP30.44■■■□□ 2.46
PHGDH-227ENST00000641811 RAD54L2Q9Y4B4 1467 aa30.43■■■□□ 2.46
PHGDH-227ENST00000641811 SOGA1O94964 1423 aa30.39■■■□□ 2.46
PHGDH-227ENST00000641811 EIF4G3O43432 1585 aaKnown RBP30.33■■■□□ 2.45
PHGDH-227ENST00000641811 AQRO60306 1485 aaKnown RBP eCLIP30.33■■■□□ 2.451e-6■■□□□ 14.4
PHGDH-227ENST00000641811 WRNQ14191 1432 aaPredicted RBP eCLIP30.29■■■□□ 2.44
PHGDH-227ENST00000641811 TDRD9Q8NDG6 1382 aaKnown RBP30.28■■■□□ 2.44
PHGDH-227ENST00000641811 SYNJ1O43426 1573 aa30.24■■■□□ 2.43
PHGDH-227ENST00000641811 TOP2BQ02880 1626 aa30.21■■■□□ 2.43
PHGDH-227ENST00000641811 BIVM-ERCC5R4GMW8 1640 aa30.19■■■□□ 2.42
PHGDH-227ENST00000641811 WDR97A6NE52 1622 aa30.14■■■□□ 2.41
PHGDH-227ENST00000641811 OSCARQ8IYS5 282 aa30.13■■■□□ 2.41
PHGDH-227ENST00000641811 ABCA10Q8WWZ4 1543 aa30.1■■■□□ 2.41
PHGDH-227ENST00000641811 GAPVD1Q14C86 1478 aa30.03■■■□□ 2.4
PHGDH-227ENST00000641811 GRIN2BQ13224 1484 aa30.02■■■□□ 2.4
PHGDH-227ENST00000641811 SNAPC4Q5SXM2 1469 aa30.02■■■□□ 2.4
PHGDH-227ENST00000641811 FBLN2P98095 1184 aa30.01■■■□□ 2.39
PHGDH-227ENST00000641811 ABCA5Q8WWZ7 1642 aa29.98■■■□□ 2.39
PHGDH-227ENST00000641811 CHD1O14646 1710 aa29.97■■■□□ 2.39
PHGDH-227ENST00000641811 PBRM1Q86U86 1689 aa29.94■■■□□ 2.38
PHGDH-227ENST00000641811 MAGI1Q96QZ7 1491 aaPredicted RBP29.93■■■□□ 2.38
PHGDH-227ENST00000641811 CHMP7Q8WUX9 453 aaPredicted RBP29.87■■■□□ 2.37
PHGDH-227ENST00000641811 SYNJ2O15056 1496 aa29.83■■■□□ 2.37
PHGDH-227ENST00000641811 ERICH3Q5RHP9 1530 aa29.72■■■□□ 2.35
PHGDH-227ENST00000641811 ADAMTS12P58397 1594 aa29.71■■■□□ 2.35
PHGDH-227ENST00000641811 FHAD1B1AJZ9 1412 aa29.66■■■□□ 2.34
PHGDH-227ENST00000641811 RIMBP3CA6NJZ7 1639 aa29.65■■■□□ 2.34
PHGDH-227ENST00000641811 RIMBP3BA6NNM3 1639 aa29.65■■■□□ 2.34
PHGDH-227ENST00000641811 RIMBP3Q9UFD9 1639 aa29.65■■■□□ 2.34
PHGDH-227ENST00000641811 KIF27Q86VH2 1401 aa29.64■■■□□ 2.34
PHGDH-227ENST00000641811 GRIN2AQ12879 1464 aa29.64■■■□□ 2.34
PHGDH-227ENST00000641811 CLASP1Q7Z460 1538 aa29.64■■■□□ 2.34
PHGDH-227ENST00000641811 ARHGEF11O15085 1522 aa29.63■■■□□ 2.33
PHGDH-227ENST00000641811 TRIM41Q8WV44 630 aa29.61■■■□□ 2.33
PHGDH-227ENST00000641811 IGF1RP08069 1367 aa29.58■■■□□ 2.33
PHGDH-227ENST00000641811 CEP170Q5SW79 1584 aa29.52■■■□□ 2.32
PHGDH-227ENST00000641811 NUP160Q12769 1436 aa29.5■■■□□ 2.31
PHGDH-227ENST00000641811 RUSC2Q8N2Y8 1516 aa29.45■■■□□ 2.3
PHGDH-227ENST00000641811 CUL7Q14999 1698 aa29.42■■■□□ 2.3
PHGDH-227ENST00000641811 CYB5RLQ6IPT4 315 aa29.42■■■□□ 2.3
PHGDH-227ENST00000641811 ARAP1Q96P48 1450 aa29.41■■■□□ 2.3
PHGDH-227ENST00000641811 CARMIL1Q5VZK9 1371 aa29.39■■■□□ 2.3
PHGDH-227ENST00000641811 ERCC6L2Q5T890 1561 aa29.3■■■□□ 2.28
PHGDH-227ENST00000641811 SHROOM2Q13796 1616 aa29.27■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms