RNA–Protein interactions for RNA: ENST00000638794.1

SMN2-216, Transcript of survival of motor neuron 2, centromeric, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SMN2, Length 846 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-216ENST00000638794 NISCHQ9Y2I1 1504 aa42.26■■■■■ 4.36
SMN2-216ENST00000638794 CCDC180Q9P1Z9 1646 aa37.91■■■■□ 3.66
SMN2-216ENST00000638794 ABCC9O60706 1549 aa37.81■■■■□ 3.64
SMN2-216ENST00000638794 RB1CC1Q8TDY2 1594 aa36.02■■■■□ 3.36
SMN2-216ENST00000638794 NACADO15069 1562 aa35.8■■■■□ 3.32
SMN2-216ENST00000638794 DCAF8L2P0C7V8 631 aa35.58■■■■□ 3.29
SMN2-216ENST00000638794 DNAJC5BQ9UF47 199 aa35.36■■■■□ 3.25
SMN2-216ENST00000638794 MYO15BQ96JP2 1530 aa35.32■■■■□ 3.25
SMN2-216ENST00000638794 UNC13AQ9UPW8 1703 aa35.28■■■■□ 3.24
SMN2-216ENST00000638794 PABPN1Q86U42 306 aaKnown RBP eCLIP35.18■■■■□ 3.22
SMN2-216ENST00000638794 ZCCHC6Q5VYS8 1495 aaKnown RBP35.06■■■■□ 3.2
SMN2-216ENST00000638794 BICRAQ9NZM4 1560 aa35■■■■□ 3.19
SMN2-216ENST00000638794 DCAF1Q9Y4B6 1507 aa34.91■■■■□ 3.18
SMN2-216ENST00000638794 SCRIBQ14160 1630 aa34.55■■■■□ 3.12
SMN2-216ENST00000638794 SHROOM4Q9ULL8 1493 aa34.5■■■■□ 3.11
SMN2-216ENST00000638794 CC2D2AQ9P2K1 1620 aa34.17■■■■□ 3.06
SMN2-216ENST00000638794 EIF4G1Q04637 1599 aaKnown RBP34.12■■■■□ 3.05
SMN2-216ENST00000638794 CECR2Q9BXF3 1484 aa34.04■■■■□ 3.04
SMN2-216ENST00000638794 NCAPD3P42695 1498 aa33.03■■■□□ 2.88
SMN2-216ENST00000638794 SMARCA4P51532 1647 aa32.97■■■□□ 2.87
SMN2-216ENST00000638794 ATAD2BQ9ULI0 1458 aa32.95■■■□□ 2.87
SMN2-216ENST00000638794 SMARCA2P51531 1590 aa32.87■■■□□ 2.85
SMN2-216ENST00000638794 HMGXB3Q12766 1538 aa32.82■■■□□ 2.84
SMN2-216ENST00000638794 BAZ1AQ9NRL2 1556 aaPredicted RBP32.8■■■□□ 2.84
SMN2-216ENST00000638794 BAZ1BQ9UIG0 1483 aaKnown RBP32.65■■■□□ 2.82
SMN2-216ENST00000638794 PEG3Q9GZU2 1588 aa32.64■■■□□ 2.82
SMN2-216ENST00000638794 ERCC6Q03468 1493 aa32.62■■■□□ 2.81
SMN2-216ENST00000638794 MROH2BQ7Z745 1585 aa32.57■■■□□ 2.8
SMN2-216ENST00000638794 CUX2O14529 1486 aa32.53■■■□□ 2.8
SMN2-216ENST00000638794 NESP48681 1621 aa32.51■■■□□ 2.79
SMN2-216ENST00000638794 DNAJC5Q9H3Z4 198 aa32.38■■■□□ 2.77
SMN2-216ENST00000638794 LAMC3Q9Y6N6 1575 aa32.29■■■□□ 2.76
SMN2-216ENST00000638794 WIZO95785 1651 aa32.21■■■□□ 2.75
SMN2-216ENST00000638794 THOC2Q8NI27 1593 aaKnown RBP32.19■■■□□ 2.74
SMN2-216ENST00000638794 KIF21AQ7Z4S6 1674 aa32.14■■■□□ 2.74
SMN2-216ENST00000638794 PDS5BQ9NTI5 1447 aa32.08■■■□□ 2.73
SMN2-216ENST00000638794 CADPSQ9ULU8 1353 aa32.02■■■□□ 2.72
SMN2-216ENST00000638794 RSF1Q96T23 1441 aaPredicted RBP31.92■■■□□ 2.7
SMN2-216ENST00000638794 MRC2Q9UBG0 1479 aa31.82■■■□□ 2.68
SMN2-216ENST00000638794 TOP2AP11388 1531 aaKnown RBP31.79■■■□□ 2.68
SMN2-216ENST00000638794 WDR62O43379 1518 aa31.75■■■□□ 2.67
SMN2-216ENST00000638794 CEP164Q9UPV0 1460 aa31.71■■■□□ 2.67
SMN2-216ENST00000638794 CFTRP13569 1480 aa31.7■■■□□ 2.66
SMN2-216ENST00000638794 FANCD2Q9BXW9 1451 aa31.68■■■□□ 2.66
SMN2-216ENST00000638794 PRDM2Q13029 1718 aa31.45■■■□□ 2.63
SMN2-216ENST00000638794 URB2Q14146 1524 aaKnown RBP31.43■■■□□ 2.62
SMN2-216ENST00000638794 CCDC88BA6NC98 1476 aa31.41■■■□□ 2.62
SMN2-216ENST00000638794 TOPBP1Q92547 1522 aa31.09■■■□□ 2.57
SMN2-216ENST00000638794 IFT140Q96RY7 1462 aa31.06■■■□□ 2.56
SMN2-216ENST00000638794 ZNF608Q9ULD9 1512 aaPredicted RBP31.03■■■□□ 2.56
SMN2-216ENST00000638794 OSCARQ8IYS5 282 aa31.02■■■□□ 2.56
SMN2-216ENST00000638794 TRIM41Q8WV44 630 aa31.02■■■□□ 2.56
SMN2-216ENST00000638794 ABCC8Q09428 1581 aa31■■■□□ 2.55
SMN2-216ENST00000638794 DNMBPQ6XZF7 1577 aa31■■■□□ 2.55
SMN2-216ENST00000638794 EIF4G3O43432 1585 aaKnown RBP30.88■■■□□ 2.53
SMN2-216ENST00000638794 TARBP1Q13395 1621 aaKnown RBP30.84■■■□□ 2.53
SMN2-216ENST00000638794 POLA1P09884 1462 aaPredicted RBP30.79■■■□□ 2.52
SMN2-216ENST00000638794 AQRO60306 1485 aaKnown RBP eCLIP30.74■■■□□ 2.51
SMN2-216ENST00000638794 RIMBP3CA6NJZ7 1639 aa30.68■■■□□ 2.5
SMN2-216ENST00000638794 RIMBP3BA6NNM3 1639 aa30.68■■■□□ 2.5
SMN2-216ENST00000638794 RIMBP3Q9UFD9 1639 aa30.68■■■□□ 2.5
SMN2-216ENST00000638794 RAD54L2Q9Y4B4 1467 aa30.67■■■□□ 2.5
SMN2-216ENST00000638794 CHD1O14646 1710 aa30.65■■■□□ 2.5
SMN2-216ENST00000638794 SOGA1O94964 1423 aa30.62■■■□□ 2.49
SMN2-216ENST00000638794 FGD5Q6ZNL6 1462 aa30.61■■■□□ 2.49
SMN2-216ENST00000638794 CUX1P39880 1505 aa30.61■■■□□ 2.49
SMN2-216ENST00000638794 ARHGEF11O15085 1522 aa30.58■■■□□ 2.49
SMN2-216ENST00000638794 TDRD9Q8NDG6 1382 aaKnown RBP30.55■■■□□ 2.48
SMN2-216ENST00000638794 SUPT5HO00267 1087 aaKnown RBP30.54■■■□□ 2.48
SMN2-216ENST00000638794 WDR97A6NE52 1622 aa30.51■■■□□ 2.48
SMN2-216ENST00000638794 FBLN2P98095 1184 aa30.49■■■□□ 2.47
SMN2-216ENST00000638794 SNAPC4Q5SXM2 1469 aa30.44■■■□□ 2.46
SMN2-216ENST00000638794 GRIN2BQ13224 1484 aa30.36■■■□□ 2.45
SMN2-216ENST00000638794 MAGI1Q96QZ7 1491 aaPredicted RBP30.35■■■□□ 2.45
SMN2-216ENST00000638794 CYB5RLQ6IPT4 315 aa30.31■■■□□ 2.44
SMN2-216ENST00000638794 PBRM1Q86U86 1689 aa30.3■■■□□ 2.44
SMN2-216ENST00000638794 ARAP1Q96P48 1450 aa30.29■■■□□ 2.44
SMN2-216ENST00000638794 CLASP1Q7Z460 1538 aa30.27■■■□□ 2.44
SMN2-216ENST00000638794 GAPVD1Q14C86 1478 aa30.27■■■□□ 2.44
SMN2-216ENST00000638794 CHMP7Q8WUX9 453 aaPredicted RBP30.27■■■□□ 2.44
SMN2-216ENST00000638794 ABCA10Q8WWZ4 1543 aa30.26■■■□□ 2.43
SMN2-216ENST00000638794 SYNJ2O15056 1496 aa30.25■■■□□ 2.43
SMN2-216ENST00000638794 SYNJ1O43426 1573 aa30.25■■■□□ 2.43
SMN2-216ENST00000638794 ABCA5Q8WWZ7 1642 aa30.24■■■□□ 2.43
SMN2-216ENST00000638794 BIVM-ERCC5R4GMW8 1640 aa30.15■■■□□ 2.42
SMN2-216ENST00000638794 TOP2BQ02880 1626 aa30.14■■■□□ 2.41
SMN2-216ENST00000638794 WRNQ14191 1432 aaPredicted RBP eCLIP30.13■■■□□ 2.41
SMN2-216ENST00000638794 ADAMTS12P58397 1594 aa30■■■□□ 2.39
SMN2-216ENST00000638794 GRIN2AQ12879 1464 aa29.98■■■□□ 2.39
SMN2-216ENST00000638794 TRHP20396 242 aaPredicted RBP29.93■■■□□ 2.38
SMN2-216ENST00000638794 CEP170Q5SW79 1584 aa29.89■■■□□ 2.38
SMN2-216ENST00000638794 ERICH3Q5RHP9 1530 aa29.88■■■□□ 2.37
SMN2-216ENST00000638794 FHAD1B1AJZ9 1412 aa29.88■■■□□ 2.37
SMN2-216ENST00000638794 NUP160Q12769 1436 aa29.88■■■□□ 2.37
SMN2-216ENST00000638794 ERCC6L2Q5T890 1561 aa29.81■■■□□ 2.36
SMN2-216ENST00000638794 SHROOM2Q13796 1616 aa29.75■■■□□ 2.35
SMN2-216ENST00000638794 RUSC2Q8N2Y8 1516 aa29.59■■■□□ 2.33
SMN2-216ENST00000638794 PRG4Q92954 1404 aaPredicted RBP29.56■■■□□ 2.32
SMN2-216ENST00000638794 JPH4Q96JJ6 628 aa29.52■■■□□ 2.32
SMN2-216ENST00000638794 KIF27Q86VH2 1401 aa29.52■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms