RNA–Protein interactions for RNA: ENST00000638663.1

SCARB2-212, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 1,922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-212ENST00000638663 NISCHQ9Y2I1 1504 aa48.96■■■■■ 5.43
SCARB2-212ENST00000638663 CCDC180Q9P1Z9 1646 aa42.58■■■■■ 4.41
SCARB2-212ENST00000638663 ZCCHC6Q5VYS8 1495 aaKnown RBP41.14■■■■■ 4.18
SCARB2-212ENST00000638663 DCAF8L2P0C7V8 631 aa40.59■■■■■ 4.09
SCARB2-212ENST00000638663 DCAF1Q9Y4B6 1507 aa40.41■■■■■ 4.06
SCARB2-212ENST00000638663 ABCC9O60706 1549 aa40.37■■■■■ 4.05
SCARB2-212ENST00000638663 SHROOM4Q9ULL8 1493 aa40.15■■■■■ 4.02
SCARB2-212ENST00000638663 MYO15BQ96JP2 1530 aa39.88■■■■□ 3.97
SCARB2-212ENST00000638663 NACADO15069 1562 aa39.67■■■■□ 3.94
SCARB2-212ENST00000638663 RB1CC1Q8TDY2 1594 aa39.34■■■■□ 3.89
SCARB2-212ENST00000638663 SCRIBQ14160 1630 aa39.3■■■■□ 3.88
SCARB2-212ENST00000638663 SUPT5HO00267 1087 aaKnown RBP38.66■■■■□ 3.78
SCARB2-212ENST00000638663 UNC13AQ9UPW8 1703 aa38.57■■■■□ 3.76
SCARB2-212ENST00000638663 BICRAQ9NZM4 1560 aa38.18■■■■□ 3.7
SCARB2-212ENST00000638663 PABPN1Q86U42 306 aaKnown RBP eCLIP38.13■■■■□ 3.69
SCARB2-212ENST00000638663 CECR2Q9BXF3 1484 aa38.11■■■■□ 3.69
SCARB2-212ENST00000638663 RSF1Q96T23 1441 aaPredicted RBP38.04■■■■□ 3.68
SCARB2-212ENST00000638663 MROH2BQ7Z745 1585 aa37.87■■■■□ 3.65
SCARB2-212ENST00000638663 BAZ1AQ9NRL2 1556 aaPredicted RBP37.78■■■■□ 3.64
SCARB2-212ENST00000638663 SMARCA4P51532 1647 aa37.62■■■■□ 3.61
SCARB2-212ENST00000638663 WIZO95785 1651 aa37.57■■■■□ 3.6
SCARB2-212ENST00000638663 TOP2AP11388 1531 aaKnown RBP37.14■■■■□ 3.54
SCARB2-212ENST00000638663 PEG3Q9GZU2 1588 aa37.1■■■■□ 3.53
SCARB2-212ENST00000638663 EIF4G1Q04637 1599 aaKnown RBP37.02■■■■□ 3.52
SCARB2-212ENST00000638663 ATAD2BQ9ULI0 1458 aa37■■■■□ 3.51
SCARB2-212ENST00000638663 CHIC1Q5VXU3 224 aa36.98■■■■□ 3.51
SCARB2-212ENST00000638663 SMARCA2P51531 1590 aa36.95■■■■□ 3.51
SCARB2-212ENST00000638663 BAZ1BQ9UIG0 1483 aaKnown RBP36.81■■■■□ 3.48
SCARB2-212ENST00000638663 CCDC88BA6NC98 1476 aa36.8■■■■□ 3.48
SCARB2-212ENST00000638663 NCAPD3P42695 1498 aa36.64■■■■□ 3.46
SCARB2-212ENST00000638663 HMGXB3Q12766 1538 aa36.58■■■■□ 3.45
SCARB2-212ENST00000638663 CC2D2AQ9P2K1 1620 aa36.48■■■■□ 3.43
SCARB2-212ENST00000638663 TRIM41Q8WV44 630 aa36.29■■■■□ 3.4
SCARB2-212ENST00000638663 ABCC8Q09428 1581 aa36.08■■■■□ 3.37
SCARB2-212ENST00000638663 CFTRP13569 1480 aa35.86■■■■□ 3.33
SCARB2-212ENST00000638663 WRNQ14191 1432 aaPredicted RBP eCLIP35.81■■■■□ 3.32
SCARB2-212ENST00000638663 CADPSQ9ULU8 1353 aa35.74■■■■□ 3.31
SCARB2-212ENST00000638663 FAM9AQ8IZU1 332 aaPredicted RBP35.71■■■■□ 3.31
SCARB2-212ENST00000638663 SYNJ1O43426 1573 aa35.66■■■■□ 3.3
SCARB2-212ENST00000638663 DNAJC5BQ9UF47 199 aa35.65■■■■□ 3.3
SCARB2-212ENST00000638663 LOC105371045A0A1W2PR82 267 aa35.64■■■■□ 3.3
SCARB2-212ENST00000638663 PRDM2Q13029 1718 aa35.62■■■■□ 3.29
SCARB2-212ENST00000638663 TOP2BQ02880 1626 aa35.47■■■■□ 3.27
SCARB2-212ENST00000638663 NESP48681 1621 aa35.46■■■■□ 3.27
SCARB2-212ENST00000638663 SOGA1O94964 1423 aa35.43■■■■□ 3.26
SCARB2-212ENST00000638663 BIVM-ERCC5R4GMW8 1640 aa35.42■■■■□ 3.26
SCARB2-212ENST00000638663 CUX1P39880 1505 aa35.4■■■■□ 3.26
SCARB2-212ENST00000638663 LAMC3Q9Y6N6 1575 aa35.37■■■■□ 3.25
SCARB2-212ENST00000638663 FANCD2Q9BXW9 1451 aa35.37■■■■□ 3.25
SCARB2-212ENST00000638663 RUSC2Q8N2Y8 1516 aa35.3■■■■□ 3.24
SCARB2-212ENST00000638663 EHMT2Q96KQ7 1210 aa35.27■■■■□ 3.24
SCARB2-212ENST00000638663 EEA1Q15075 1411 aa35.27■■■■□ 3.24
SCARB2-212ENST00000638663 CSRNP3Q8WYN3 585 aa35.15■■■■□ 3.22
SCARB2-212ENST00000638663 PDS5BQ9NTI5 1447 aa35.13■■■■□ 3.21
SCARB2-212ENST00000638663 CEP164Q9UPV0 1460 aa35.12■■■■□ 3.21
SCARB2-212ENST00000638663 DNMBPQ6XZF7 1577 aa35.02■■■■□ 3.2
SCARB2-212ENST00000638663 FGD5Q6ZNL6 1462 aa35■■■■□ 3.19
SCARB2-212ENST00000638663 KIF21AQ7Z4S6 1674 aa34.98■■■■□ 3.19
SCARB2-212ENST00000638663 TOPBP1Q92547 1522 aa34.98■■■■□ 3.19
SCARB2-212ENST00000638663 URB2Q14146 1524 aaKnown RBP34.92■■■■□ 3.18
SCARB2-212ENST00000638663 KIF27Q86VH2 1401 aa34.88■■■■□ 3.17
SCARB2-212ENST00000638663 GOLGA3Q08378 1498 aa34.83■■■■□ 3.17
SCARB2-212ENST00000638663 POLA1P09884 1462 aaPredicted RBP34.82■■■■□ 3.16
SCARB2-212ENST00000638663 KIF21BO75037 1637 aa34.82■■■■□ 3.16
SCARB2-212ENST00000638663 CUX2O14529 1486 aa34.81■■■■□ 3.16
SCARB2-212ENST00000638663 UBTFP17480 764 aaKnown RBP34.76■■■■□ 3.15
SCARB2-212ENST00000638663 RAD54L2Q9Y4B4 1467 aa34.75■■■■□ 3.15
SCARB2-212ENST00000638663 TNIKQ9UKE5 1360 aa34.74■■■■□ 3.15
SCARB2-212ENST00000638663 RAPGEF2Q9Y4G8 1499 aa34.69■■■■□ 3.14
SCARB2-212ENST00000638663 MRC2Q9UBG0 1479 aa34.68■■■■□ 3.14
SCARB2-212ENST00000638663 ABCA10Q8WWZ4 1543 aa34.67■■■■□ 3.14
SCARB2-212ENST00000638663 PRXQ9BXM0 1461 aa34.66■■■■□ 3.14
SCARB2-212ENST00000638663 CEP162Q5TB80 1403 aa34.59■■■■□ 3.13
SCARB2-212ENST00000638663 ERCC6Q03468 1493 aa34.59■■■■□ 3.13
SCARB2-212ENST00000638663 IGF1RP08069 1367 aa34.58■■■■□ 3.13
SCARB2-212ENST00000638663 ERICH3Q5RHP9 1530 aa34.57■■■■□ 3.12
SCARB2-212ENST00000638663 WDR97A6NE52 1622 aa34.52■■■■□ 3.12
SCARB2-212ENST00000638663 WDR62O43379 1518 aa34.47■■■■□ 3.11
SCARB2-212ENST00000638663 TARBP1Q13395 1621 aaKnown RBP34.43■■■■□ 3.1
SCARB2-212ENST00000638663 CARMIL1Q5VZK9 1371 aa34.42■■■■□ 3.1
SCARB2-212ENST00000638663 TDRD9Q8NDG6 1382 aaKnown RBP34.42■■■■□ 3.1
SCARB2-212ENST00000638663 ABCA5Q8WWZ7 1642 aa34.37■■■■□ 3.09
SCARB2-212ENST00000638663 THOC2Q8NI27 1593 aaKnown RBP34.36■■■■□ 3.09
SCARB2-212ENST00000638663 GAPVD1Q14C86 1478 aa34.33■■■■□ 3.09
SCARB2-212ENST00000638663 CLIP1P30622 1438 aa34.31■■■■□ 3.08
SCARB2-212ENST00000638663 RANGAP1P46060 587 aaPredicted RBP34.26■■■■□ 3.08
SCARB2-212ENST00000638663 IFT140Q96RY7 1462 aa34.25■■■■□ 3.07
SCARB2-212ENST00000638663 CUL7Q14999 1698 aa34.25■■■■□ 3.07
SCARB2-212ENST00000638663 AQRO60306 1485 aaKnown RBP eCLIP34.19■■■■□ 3.06
SCARB2-212ENST00000638663 ZNF608Q9ULD9 1512 aaPredicted RBP34.13■■■■□ 3.05
SCARB2-212ENST00000638663 PBRM1Q86U86 1689 aa34.1■■■■□ 3.05
SCARB2-212ENST00000638663 PCGF6Q9BYE7 350 aa34.07■■■■□ 3.04
SCARB2-212ENST00000638663 GRIN2BQ13224 1484 aa34.04■■■■□ 3.04
SCARB2-212ENST00000638663 PPARGC1BQ86YN6 1023 aaKnown RBP34.02■■■■□ 3.04
SCARB2-212ENST00000638663 VPS8Q8N3P4 1428 aa33.99■■■■□ 3.03
SCARB2-212ENST00000638663 TRIM26Q12899 539 aaPredicted RBP33.98■■■■□ 3.03
SCARB2-212ENST00000638663 EIF4G3O43432 1585 aaKnown RBP33.97■■■■□ 3.03
SCARB2-212ENST00000638663 ARAP1Q96P48 1450 aa33.96■■■■□ 3.03
SCARB2-212ENST00000638663 FHAD1B1AJZ9 1412 aa33.95■■■■□ 3.02
SCARB2-212ENST00000638663 ARHGAP35Q9NRY4 1499 aa33.93■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms