RNA–Protein interactions for RNA: ENST00000636120.1

PDE4D-228, Transcript of phosphodiesterase 4D, humanhuman

TSL 5 BASIC

Gene PDE4D, Length 6,659 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE4D-228ENST00000636120 NISCHQ9Y2I1 1504 aa11.6□□□□□ -0.55
PDE4D-228ENST00000636120 DCAF8L2P0C7V8 631 aa11.2□□□□□ -0.62
PDE4D-228ENST00000636120 SUPT5HO00267 1087 aaKnown RBP10.68□□□□□ -0.7
PDE4D-228ENST00000636120 SHROOM4Q9ULL8 1493 aa10.61□□□□□ -0.71
PDE4D-228ENST00000636120 APLP2Q06481 763 aa10.16□□□□□ -0.78
PDE4D-228ENST00000636120 FAM9AQ8IZU1 332 aaPredicted RBP10.09□□□□□ -0.79
PDE4D-228ENST00000636120 EHMT2Q96KQ7 1210 aa10.09□□□□□ -0.79
PDE4D-228ENST00000636120 TRIM41Q8WV44 630 aa10.03□□□□□ -0.8
PDE4D-228ENST00000636120 PELP1Q8IZL8 1130 aaKnown RBP9.94□□□□□ -0.82
PDE4D-228ENST00000636120 ZEB1P37275 1124 aaPredicted RBP9.93□□□□□ -0.82
PDE4D-228ENST00000636120 PCGF6Q9BYE7 350 aa9.86□□□□□ -0.83
PDE4D-228ENST00000636120 UBTFP17480 764 aaKnown RBP9.83□□□□□ -0.84
PDE4D-228ENST00000636120 CCDC180Q9P1Z9 1646 aa9.82□□□□□ -0.84
PDE4D-228ENST00000636120 TTBK1Q5TCY1 1321 aaPredicted RBP9.76□□□□□ -0.85
PDE4D-228ENST00000636120 ABCC9O60706 1549 aa9.75□□□□□ -0.85
PDE4D-228ENST00000636120 CCER1Q8TC90 406 aaPredicted RBP9.74□□□□□ -0.85
PDE4D-228ENST00000636120 RANGAP1P46060 587 aaPredicted RBP9.74□□□□□ -0.85
PDE4D-228ENST00000636120 ATP1B4Q9UN42 357 aaPredicted RBP9.72□□□□□ -0.85
PDE4D-228ENST00000636120 TRIM26Q12899 539 aaPredicted RBP9.68□□□□□ -0.86
PDE4D-228ENST00000636120 CENPBP07199 599 aaPredicted RBP9.68□□□□□ -0.86
PDE4D-228ENST00000636120 CHIC1Q5VXU3 224 aa9.67□□□□□ -0.86
PDE4D-228ENST00000636120 ZCCHC6Q5VYS8 1495 aaKnown RBP9.66□□□□□ -0.86
PDE4D-228ENST00000636120 SCRIBQ14160 1630 aa9.53□□□□□ -0.88
PDE4D-228ENST00000636120 PABPN1Q86U42 306 aaKnown RBP eCLIP9.51□□□□□ -0.89
PDE4D-228ENST00000636120 LOC105371045A0A1W2PR82 267 aa9.49□□□□□ -0.89
PDE4D-228ENST00000636120 HRCP23327 699 aa9.48□□□□□ -0.89
PDE4D-228ENST00000636120 PPARGC1BQ86YN6 1023 aaKnown RBP9.47□□□□□ -0.89
PDE4D-228ENST00000636120 RB1CC1Q8TDY2 1594 aa9.44□□□□□ -0.9
PDE4D-228ENST00000636120 NEFLP07196 543 aa9.44□□□□□ -0.9
PDE4D-228ENST00000636120 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.43□□□□□ -0.9
PDE4D-228ENST00000636120 HNRNPUL2Q1KMD3 747 aaKnown RBP9.43□□□□□ -0.9
PDE4D-228ENST00000636120 ERICH6Q7L0X2 663 aa9.39□□□□□ -0.91
PDE4D-228ENST00000636120 NACADO15069 1562 aa9.39□□□□□ -0.91
PDE4D-228ENST00000636120 ITGAEP38570 1179 aa9.37□□□□□ -0.91
PDE4D-228ENST00000636120 MYT1LQ9UL68 1186 aa9.34□□□□□ -0.91
PDE4D-228ENST00000636120 DCAF1Q9Y4B6 1507 aa9.33□□□□□ -0.92
PDE4D-228ENST00000636120 YTHDC1Q96MU7 727 aaKnown RBP9.33□□□□□ -0.92
PDE4D-228ENST00000636120 FAM50AQ14320 339 aaKnown RBP9.28□□□□□ -0.92
PDE4D-228ENST00000636120 CSRNP3Q8WYN3 585 aa9.28□□□□□ -0.92
PDE4D-228ENST00000636120 MYT1Q01538 1121 aa9.21□□□□□ -0.94
PDE4D-228ENST00000636120 POLR3GLQ9BT43 218 aa9.2□□□□□ -0.94
PDE4D-228ENST00000636120 TRIM52Q96A61 297 aa9.2□□□□□ -0.94
PDE4D-228ENST00000636120 DIEXFQ68CQ4 756 aaKnown RBP9.19□□□□□ -0.94
PDE4D-228ENST00000636120 RSF1Q96T23 1441 aaPredicted RBP9.17□□□□□ -0.94
PDE4D-228ENST00000636120 EEA1Q15075 1411 aa9.16□□□□□ -0.94
PDE4D-228ENST00000636120 BAZ1AQ9NRL2 1556 aaPredicted RBP9.16□□□□□ -0.94
PDE4D-228ENST00000636120 CDK11AQ9UQ88 783 aaPredicted RBP9.14□□□□□ -0.95
PDE4D-228ENST00000636120 FBLN2P98095 1184 aa9.13□□□□□ -0.95
PDE4D-228ENST00000636120 BAZ1BQ9UIG0 1483 aaKnown RBP9.13□□□□□ -0.95
PDE4D-228ENST00000636120 NEUROD1Q13562 356 aa9.11□□□□□ -0.95
PDE4D-228ENST00000636120 DAXXQ9UER7 740 aaPredicted RBP9.09□□□□□ -0.95
PDE4D-228ENST00000636120 MYO15BQ96JP2 1530 aa9.09□□□□□ -0.95
PDE4D-228ENST00000636120 ZNF316A6NFI3 1004 aaPredicted RBP9.08□□□□□ -0.96
PDE4D-228ENST00000636120 GOLGA3Q08378 1498 aa9.08□□□□□ -0.96
PDE4D-228ENST00000636120 ANP32CO43423 234 aa9.07□□□□□ -0.96
PDE4D-228ENST00000636120 P3H3Q8IVL6 736 aa9.07□□□□□ -0.96
PDE4D-228ENST00000636120 SLC4A1APQ9BWU0 796 aaKnown RBP9.05□□□□□ -0.96
PDE4D-228ENST00000636120 WRNQ14191 1432 aaPredicted RBP eCLIP9.04□□□□□ -0.96
PDE4D-228ENST00000636120 CLIP1P30622 1438 aa9.02□□□□□ -0.97
PDE4D-228ENST00000636120 CEP164Q9UPV0 1460 aa9.01□□□□□ -0.97
PDE4D-228ENST00000636120 ACIN1Q9UKV3 1341 aaKnown RBP9□□□□□ -0.97
PDE4D-228ENST00000636120 KIF27Q86VH2 1401 aa8.99□□□□□ -0.97
PDE4D-228ENST00000636120 CNGB1Q14028 1251 aaPredicted RBP8.99□□□□□ -0.97
PDE4D-228ENST00000636120 SMARCA2P51531 1590 aa8.99□□□□□ -0.97
PDE4D-228ENST00000636120 ZNF326Q5BKZ1 582 aaKnown RBP8.98□□□□□ -0.97
PDE4D-228ENST00000636120 ZNF777Q9ULD5 760 aaPredicted RBP8.97□□□□□ -0.97
PDE4D-228ENST00000636120 CEP162Q5TB80 1403 aa8.97□□□□□ -0.97
PDE4D-228ENST00000636120 TONSLQ96HA7 1378 aa8.97□□□□□ -0.97
PDE4D-228ENST00000636120 TNIKQ9UKE5 1360 aa8.97□□□□□ -0.97
PDE4D-228ENST00000636120 MTUS2Q5JR59 1369 aa8.95□□□□□ -0.98
PDE4D-228ENST00000636120 ARID3CA6NKF2 412 aa8.95□□□□□ -0.98
PDE4D-228ENST00000636120 CLSPNQ9HAW4 1339 aa8.94□□□□□ -0.98
PDE4D-228ENST00000636120 CECR2Q9BXF3 1484 aa8.94□□□□□ -0.98
PDE4D-228ENST00000636120 NPM1P06748 294 aaKnown RBP eCLIP8.93□□□□□ -0.98
PDE4D-228ENST00000636120 TOP2AP11388 1531 aaKnown RBP8.93□□□□□ -0.98
PDE4D-228ENST00000636120 CHMP7Q8WUX9 453 aaPredicted RBP8.92□□□□□ -0.98
PDE4D-228ENST00000636120 MROH2BQ7Z745 1585 aa8.91□□□□□ -0.98
PDE4D-228ENST00000636120 NEFMP07197 916 aa8.89□□□□□ -0.99
PDE4D-228ENST00000636120 CCDC88BA6NC98 1476 aa8.88□□□□□ -0.99
PDE4D-228ENST00000636120 GTF3C3Q9Y5Q9 886 aa8.87□□□□□ -0.99
PDE4D-228ENST00000636120 TSPY4P0CV99 314 aa8.86□□□□□ -0.99
PDE4D-228ENST00000636120 TSPY10P0CW01 314 aa8.86□□□□□ -0.99
PDE4D-228ENST00000636120 ESF1Q9H501 851 aaKnown RBP8.86□□□□□ -0.99
PDE4D-228ENST00000636120 ERCC6Q03468 1493 aa8.85□□□□□ -0.99
PDE4D-228ENST00000636120 FHAD1B1AJZ9 1412 aa8.85□□□□□ -0.99
PDE4D-228ENST00000636120 RTL5Q5HYW3 569 aaPredicted RBP8.85□□□□□ -0.99
PDE4D-228ENST00000636120 WIZO95785 1651 aa8.85□□□□□ -0.99
PDE4D-228ENST00000636120 ZBTB47Q9UFB7 747 aaPredicted RBP8.84□□□□□ -0.99
PDE4D-228ENST00000636120 SMARCA4P51532 1647 aa8.84□□□□□ -0.99
PDE4D-228ENST00000636120 BCANQ96GW7 911 aa8.84□□□□□ -0.99
PDE4D-228ENST00000636120 CANXP27824 592 aaKnown RBP8.83□□□□□ -1
PDE4D-228ENST00000636120 CHIC2Q9UKJ5 165 aa8.81□□□□□ -1
PDE4D-228ENST00000636120 PLEKHD1A6NEE1 506 aa8.81□□□□□ -1
PDE4D-228ENST00000636120 CUX2O14529 1486 aa8.81□□□□□ -1
PDE4D-228ENST00000636120 STAG3Q9UJ98 1225 aa8.8□□□□□ -1
PDE4D-228ENST00000636120 PDS5BQ9NTI5 1447 aa8.79□□□□□ -1
PDE4D-228ENST00000636120 CARMIL1Q5VZK9 1371 aa8.79□□□□□ -1
PDE4D-228ENST00000636120 ABCC8Q09428 1581 aa8.78□□□□□ -1
PDE4D-228ENST00000636120 SOGA1O94964 1423 aa8.77□□□□□ -1.01
PDE4D-228ENST00000636120 CHGAP10645 457 aaKnown RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 292.4 ms