RNA–Protein interactions for RNA: ENST00000635652.1

PTPN11-206, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

TSL 3

Gene PTPN11, Length 588 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-206ENST00000635652 NISCHQ9Y2I1 1504 aa31.33■■■□□ 2.61
PTPN11-206ENST00000635652 CCDC180Q9P1Z9 1646 aa28.04■■■□□ 2.08
PTPN11-206ENST00000635652 ABCC9O60706 1549 aa28.02■■■□□ 2.08
PTPN11-206ENST00000635652 RB1CC1Q8TDY2 1594 aa26.69■■□□□ 1.86
PTPN11-206ENST00000635652 DCAF8L2P0C7V8 631 aa26.56■■□□□ 1.84
PTPN11-206ENST00000635652 NACADO15069 1562 aa26.52■■□□□ 1.84
PTPN11-206ENST00000635652 DNAJC5BQ9UF47 199 aa26.21■■□□□ 1.79
PTPN11-206ENST00000635652 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.78
PTPN11-206ENST00000635652 MYO15BQ96JP2 1530 aa26.14■■□□□ 1.77
PTPN11-206ENST00000635652 UNC13AQ9UPW8 1703 aa26.08■■□□□ 1.77
PTPN11-206ENST00000635652 ZCCHC6Q5VYS8 1495 aaKnown RBP25.96■■□□□ 1.75
PTPN11-206ENST00000635652 BICRAQ9NZM4 1560 aa25.87■■□□□ 1.73
PTPN11-206ENST00000635652 DCAF1Q9Y4B6 1507 aa25.84■■□□□ 1.73
PTPN11-206ENST00000635652 SCRIBQ14160 1630 aa25.61■■□□□ 1.69
PTPN11-206ENST00000635652 SHROOM4Q9ULL8 1493 aa25.5■■□□□ 1.67
PTPN11-206ENST00000635652 CC2D2AQ9P2K1 1620 aa25.3■■□□□ 1.64
PTPN11-206ENST00000635652 EIF4G1Q04637 1599 aaKnown RBP25.26■■□□□ 1.63
PTPN11-206ENST00000635652 CECR2Q9BXF3 1484 aa25.22■■□□□ 1.63
PTPN11-206ENST00000635652 NCAPD3P42695 1498 aa24.47■■□□□ 1.51
PTPN11-206ENST00000635652 ATAD2BQ9ULI0 1458 aa24.42■■□□□ 1.5
PTPN11-206ENST00000635652 SMARCA4P51532 1647 aa24.42■■□□□ 1.5
PTPN11-206ENST00000635652 SMARCA2P51531 1590 aa24.37■■□□□ 1.49
PTPN11-206ENST00000635652 BAZ1AQ9NRL2 1556 aaPredicted RBP24.31■■□□□ 1.48
PTPN11-206ENST00000635652 HMGXB3Q12766 1538 aa24.28■■□□□ 1.48
PTPN11-206ENST00000635652 ERCC6Q03468 1493 aa24.21■■□□□ 1.47
PTPN11-206ENST00000635652 BAZ1BQ9UIG0 1483 aaKnown RBP24.21■■□□□ 1.47
PTPN11-206ENST00000635652 PEG3Q9GZU2 1588 aa24.15■■□□□ 1.46
PTPN11-206ENST00000635652 MROH2BQ7Z745 1585 aa24.14■■□□□ 1.45
PTPN11-206ENST00000635652 NESP48681 1621 aa24.09■■□□□ 1.45
PTPN11-206ENST00000635652 CUX2O14529 1486 aa24.07■■□□□ 1.44
PTPN11-206ENST00000635652 DNAJC5Q9H3Z4 198 aa24■■□□□ 1.43
PTPN11-206ENST00000635652 LAMC3Q9Y6N6 1575 aa23.91■■□□□ 1.42
PTPN11-206ENST00000635652 WIZO95785 1651 aa23.88■■□□□ 1.41
PTPN11-206ENST00000635652 PDS5BQ9NTI5 1447 aa23.81■■□□□ 1.4
PTPN11-206ENST00000635652 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
PTPN11-206ENST00000635652 KIF21AQ7Z4S6 1674 aa23.78■■□□□ 1.4
PTPN11-206ENST00000635652 CADPSQ9ULU8 1353 aa23.76■■□□□ 1.39
PTPN11-206ENST00000635652 RSF1Q96T23 1441 aaPredicted RBP23.68■■□□□ 1.38
PTPN11-206ENST00000635652 MRC2Q9UBG0 1479 aa23.57■■□□□ 1.36
PTPN11-206ENST00000635652 TOP2AP11388 1531 aaKnown RBP23.55■■□□□ 1.36
PTPN11-206ENST00000635652 CEP164Q9UPV0 1460 aa23.51■■□□□ 1.35
PTPN11-206ENST00000635652 FANCD2Q9BXW9 1451 aa23.49■■□□□ 1.35
PTPN11-206ENST00000635652 CFTRP13569 1480 aa23.49■■□□□ 1.35
PTPN11-206ENST00000635652 WDR62O43379 1518 aa23.49■■□□□ 1.35
PTPN11-206ENST00000635652 CCDC88BA6NC98 1476 aa23.32■■□□□ 1.32
PTPN11-206ENST00000635652 PRDM2Q13029 1718 aa23.27■■□□□ 1.32
PTPN11-206ENST00000635652 URB2Q14146 1524 aaKnown RBP23.27■■□□□ 1.32
PTPN11-206ENST00000635652 OSCARQ8IYS5 282 aa23.06■■□□□ 1.28
PTPN11-206ENST00000635652 TRIM41Q8WV44 630 aa23.06■■□□□ 1.28
PTPN11-206ENST00000635652 TOPBP1Q92547 1522 aa23.05■■□□□ 1.28
PTPN11-206ENST00000635652 IFT140Q96RY7 1462 aa23.02■■□□□ 1.28
PTPN11-206ENST00000635652 ABCC8Q09428 1581 aa23.01■■□□□ 1.27
PTPN11-206ENST00000635652 ZNF608Q9ULD9 1512 aaPredicted RBP22.98■■□□□ 1.27
PTPN11-206ENST00000635652 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
PTPN11-206ENST00000635652 EIF4G3O43432 1585 aaKnown RBP22.85■■□□□ 1.25
PTPN11-206ENST00000635652 TARBP1Q13395 1621 aaKnown RBP22.82■■□□□ 1.24
PTPN11-206ENST00000635652 SUPT5HO00267 1087 aaKnown RBP22.82■■□□□ 1.24
PTPN11-206ENST00000635652 AQRO60306 1485 aaKnown RBP eCLIP22.81■■□□□ 1.244e-6■■■■■ 31
PTPN11-206ENST00000635652 POLA1P09884 1462 aaPredicted RBP22.81■■□□□ 1.24
PTPN11-206ENST00000635652 SOGA1O94964 1423 aa22.75■■□□□ 1.23
PTPN11-206ENST00000635652 RAD54L2Q9Y4B4 1467 aa22.75■■□□□ 1.23
PTPN11-206ENST00000635652 FBLN2P98095 1184 aa22.73■■□□□ 1.23
PTPN11-206ENST00000635652 TDRD9Q8NDG6 1382 aaKnown RBP22.7■■□□□ 1.22
PTPN11-206ENST00000635652 RIMBP3CA6NJZ7 1639 aa22.7■■□□□ 1.22
PTPN11-206ENST00000635652 RIMBP3BA6NNM3 1639 aa22.7■■□□□ 1.22
PTPN11-206ENST00000635652 RIMBP3Q9UFD9 1639 aa22.7■■□□□ 1.22
PTPN11-206ENST00000635652 FGD5Q6ZNL6 1462 aa22.69■■□□□ 1.22
PTPN11-206ENST00000635652 CHD1O14646 1710 aa22.68■■□□□ 1.22
PTPN11-206ENST00000635652 CUX1P39880 1505 aa22.68■■□□□ 1.22
PTPN11-206ENST00000635652 ARHGEF11O15085 1522 aa22.63■■□□□ 1.21
PTPN11-206ENST00000635652 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
PTPN11-206ENST00000635652 SNAPC4Q5SXM2 1469 aa22.56■■□□□ 1.2
PTPN11-206ENST00000635652 CYB5RLQ6IPT4 315 aa22.55■■□□□ 1.2
PTPN11-206ENST00000635652 CHMP7Q8WUX9 453 aaPredicted RBP22.54■■□□□ 1.2
PTPN11-206ENST00000635652 GRIN2BQ13224 1484 aa22.52■■□□□ 1.2
PTPN11-206ENST00000635652 MAGI1Q96QZ7 1491 aaPredicted RBP22.49■■□□□ 1.19
PTPN11-206ENST00000635652 GAPVD1Q14C86 1478 aa22.46■■□□□ 1.19
PTPN11-206ENST00000635652 PBRM1Q86U86 1689 aa22.43■■□□□ 1.18
PTPN11-206ENST00000635652 SYNJ2O15056 1496 aa22.43■■□□□ 1.18
PTPN11-206ENST00000635652 ABCA10Q8WWZ4 1543 aa22.42■■□□□ 1.18
PTPN11-206ENST00000635652 SYNJ1O43426 1573 aa22.42■■□□□ 1.18
PTPN11-206ENST00000635652 ARAP1Q96P48 1450 aa22.41■■□□□ 1.18
PTPN11-206ENST00000635652 WRNQ14191 1432 aaPredicted RBP eCLIP22.4■■□□□ 1.18
PTPN11-206ENST00000635652 CLASP1Q7Z460 1538 aa22.38■■□□□ 1.17
PTPN11-206ENST00000635652 ABCA5Q8WWZ7 1642 aa22.37■■□□□ 1.17
PTPN11-206ENST00000635652 TOP2BQ02880 1626 aa22.34■■□□□ 1.17
PTPN11-206ENST00000635652 BIVM-ERCC5R4GMW8 1640 aa22.33■■□□□ 1.17
PTPN11-206ENST00000635652 TRHP20396 242 aaPredicted RBP22.3■■□□□ 1.16
PTPN11-206ENST00000635652 GRIN2AQ12879 1464 aa22.22■■□□□ 1.15
PTPN11-206ENST00000635652 ADAMTS12P58397 1594 aa22.2■■□□□ 1.14
PTPN11-206ENST00000635652 FHAD1B1AJZ9 1412 aa22.16■■□□□ 1.14
PTPN11-206ENST00000635652 ERICH3Q5RHP9 1530 aa22.15■■□□□ 1.14
PTPN11-206ENST00000635652 CEP170Q5SW79 1584 aa22.13■■□□□ 1.13
PTPN11-206ENST00000635652 NUP160Q12769 1436 aa22.12■■□□□ 1.13
PTPN11-206ENST00000635652 ERCC6L2Q5T890 1561 aa22.08■■□□□ 1.12
PTPN11-206ENST00000635652 SHROOM2Q13796 1616 aa22■■□□□ 1.11
PTPN11-206ENST00000635652 JPH4Q96JJ6 628 aa21.97■■□□□ 1.11
PTPN11-206ENST00000635652 PRG4Q92954 1404 aaPredicted RBP21.95■■□□□ 1.1
PTPN11-206ENST00000635652 KIF27Q86VH2 1401 aa21.94■■□□□ 1.1
PTPN11-206ENST00000635652 IGF1RP08069 1367 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms