RNA–Protein interactions for RNA: ENST00000635625.1

PTPN11-205, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene PTPN11, Length 1,794 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-205ENST00000635625 AEBP2Q6ZN18 517 aaPredicted RBP29.1■■■□□ 2.25
PTPN11-205ENST00000635625 CHIC1Q5VXU3 224 aa28.42■■■□□ 2.14
PTPN11-205ENST00000635625 NISCHQ9Y2I1 1504 aa26.57■■□□□ 1.84
PTPN11-205ENST00000635625 PHF23Q9BUL5 403 aaPredicted RBP24.98■■□□□ 1.59
PTPN11-205ENST00000635625 SENP3Q9H4L4 574 aaPredicted RBP24.73■■□□□ 1.55
PTPN11-205ENST00000635625 PLPPR3Q6T4P5 718 aa23.09■■□□□ 1.29
PTPN11-205ENST00000635625 CCDC180Q9P1Z9 1646 aa23.02■■□□□ 1.28
PTPN11-205ENST00000635625 FOXD1Q16676 465 aa22.93■■□□□ 1.26
PTPN11-205ENST00000635625 ZCCHC6Q5VYS8 1495 aaKnown RBP22.48■■□□□ 1.19
PTPN11-205ENST00000635625 DCAF1Q9Y4B6 1507 aa22.08■■□□□ 1.13
PTPN11-205ENST00000635625 ABCC9O60706 1549 aa22.04■■□□□ 1.12
PTPN11-205ENST00000635625 PPP6R1Q9UPN7 881 aa22.03■■□□□ 1.12
PTPN11-205ENST00000635625 ADRA2BP18089 450 aa22.02■■□□□ 1.11
PTPN11-205ENST00000635625 SHROOM4Q9ULL8 1493 aa21.92■■□□□ 1.1
PTPN11-205ENST00000635625 PIAS4Q8N2W9 510 aaPredicted RBP21.64■■□□□ 1.06
PTPN11-205ENST00000635625 MYO15BQ96JP2 1530 aa21.61■■□□□ 1.05
PTPN11-205ENST00000635625 DCAF8L2P0C7V8 631 aa21.51■■□□□ 1.03
PTPN11-205ENST00000635625 SUPT5HO00267 1087 aaKnown RBP21.4■■□□□ 1.02
PTPN11-205ENST00000635625 NACADO15069 1562 aa21.24■□□□□ 0.99
PTPN11-205ENST00000635625 MSH5O43196 834 aa21.18■□□□□ 0.98
PTPN11-205ENST00000635625 SCRIBQ14160 1630 aa21.1■□□□□ 0.97
PTPN11-205ENST00000635625 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
PTPN11-205ENST00000635625 RSF1Q96T23 1441 aaPredicted RBP20.8■□□□□ 0.92
PTPN11-205ENST00000635625 UNC13AQ9UPW8 1703 aa20.67■□□□□ 0.9
PTPN11-205ENST00000635625 PABPN1Q86U42 306 aaKnown RBP eCLIP20.64■□□□□ 0.89
PTPN11-205ENST00000635625 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
PTPN11-205ENST00000635625 BICRAQ9NZM4 1560 aa20.5■□□□□ 0.87
PTPN11-205ENST00000635625 MROH2BQ7Z745 1585 aa20.5■□□□□ 0.87
PTPN11-205ENST00000635625 CECR2Q9BXF3 1484 aa20.5■□□□□ 0.87
PTPN11-205ENST00000635625 DNAJC5BQ9UF47 199 aa20.41■□□□□ 0.86
PTPN11-205ENST00000635625 WIZO95785 1651 aa20.38■□□□□ 0.85
PTPN11-205ENST00000635625 SMARCA4P51532 1647 aa20.32■□□□□ 0.84
PTPN11-205ENST00000635625 PPP4R3CPQ6ZMV5 832 aa20.32■□□□□ 0.84
PTPN11-205ENST00000635625 TOP2AP11388 1531 aaKnown RBP20.27■□□□□ 0.84
PTPN11-205ENST00000635625 EIF4G1Q04637 1599 aaKnown RBP20.2■□□□□ 0.82
PTPN11-205ENST00000635625 SCAF1Q9H7N4 1312 aaKnown RBP20.18■□□□□ 0.82
PTPN11-205ENST00000635625 TRIM41Q8WV44 630 aa20.16■□□□□ 0.82
PTPN11-205ENST00000635625 PEG3Q9GZU2 1588 aa20.1■□□□□ 0.81
PTPN11-205ENST00000635625 SMARCA2P51531 1590 aa20.06■□□□□ 0.8
PTPN11-205ENST00000635625 LOC105371045A0A1W2PR82 267 aa20■□□□□ 0.79
PTPN11-205ENST00000635625 CCDC88BA6NC98 1476 aa19.98■□□□□ 0.79
PTPN11-205ENST00000635625 MAPK8IP2Q13387 824 aaPredicted RBP19.97■□□□□ 0.79
PTPN11-205ENST00000635625 CC2D2AQ9P2K1 1620 aa19.9■□□□□ 0.78
PTPN11-205ENST00000635625 KCNA4P22459 653 aa19.84■□□□□ 0.77
PTPN11-205ENST00000635625 HRCP23327 699 aa19.83■□□□□ 0.77
PTPN11-205ENST00000635625 NCBP3Q53F19 620 aaKnown RBP19.8■□□□□ 0.76
PTPN11-205ENST00000635625 PCGF6Q9BYE7 350 aa19.8■□□□□ 0.76
PTPN11-205ENST00000635625 ATAD2BQ9ULI0 1458 aa19.78■□□□□ 0.76
PTPN11-205ENST00000635625 CNKSR2Q8WXI2 1034 aa19.77■□□□□ 0.76
PTPN11-205ENST00000635625 TRIM26Q12899 539 aaPredicted RBP19.75■□□□□ 0.75
PTPN11-205ENST00000635625 EEA1Q15075 1411 aa19.75■□□□□ 0.75
PTPN11-205ENST00000635625 ABCC8Q09428 1581 aa19.74■□□□□ 0.75
PTPN11-205ENST00000635625 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
PTPN11-205ENST00000635625 DMRT2Q9Y5R5 561 aa19.72■□□□□ 0.75
PTPN11-205ENST00000635625 FAM9AQ8IZU1 332 aaPredicted RBP19.69■□□□□ 0.74
PTPN11-205ENST00000635625 HMGXB3Q12766 1538 aa19.63■□□□□ 0.73
PTPN11-205ENST00000635625 WRNQ14191 1432 aaPredicted RBP eCLIP19.59■□□□□ 0.73
PTPN11-205ENST00000635625 NCAPD3P42695 1498 aa19.54■□□□□ 0.72
PTPN11-205ENST00000635625 NPM3O75607 178 aaKnown RBP19.51■□□□□ 0.71
PTPN11-205ENST00000635625 SYNJ1O43426 1573 aa19.49■□□□□ 0.71
PTPN11-205ENST00000635625 TNIKQ9UKE5 1360 aa19.48■□□□□ 0.71
PTPN11-205ENST00000635625 SOGA1O94964 1423 aa19.47■□□□□ 0.71
PTPN11-205ENST00000635625 GOLGA3Q08378 1498 aa19.45■□□□□ 0.7
PTPN11-205ENST00000635625 KIF21BO75037 1637 aa19.44■□□□□ 0.7
PTPN11-205ENST00000635625 TOP2BQ02880 1626 aa19.42■□□□□ 0.7
PTPN11-205ENST00000635625 CSRNP3Q8WYN3 585 aa19.42■□□□□ 0.7
PTPN11-205ENST00000635625 BIVM-ERCC5R4GMW8 1640 aa19.42■□□□□ 0.7
PTPN11-205ENST00000635625 ZEB1P37275 1124 aaPredicted RBP19.39■□□□□ 0.7
PTPN11-205ENST00000635625 RNF216Q9NWF9 866 aaPredicted RBP19.39■□□□□ 0.7
PTPN11-205ENST00000635625 CEP162Q5TB80 1403 aa19.39■□□□□ 0.69
PTPN11-205ENST00000635625 CEP164Q9UPV0 1460 aa19.38■□□□□ 0.69
PTPN11-205ENST00000635625 PRDM2Q13029 1718 aa19.36■□□□□ 0.69
PTPN11-205ENST00000635625 RUSC2Q8N2Y8 1516 aa19.33■□□□□ 0.68
PTPN11-205ENST00000635625 HOXD11P31277 338 aaPredicted RBP19.32■□□□□ 0.68
PTPN11-205ENST00000635625 EHMT2Q96KQ7 1210 aa19.3■□□□□ 0.68
PTPN11-205ENST00000635625 POTEDQ86YR6 584 aa19.29■□□□□ 0.68
PTPN11-205ENST00000635625 CFTRP13569 1480 aa19.27■□□□□ 0.68
PTPN11-205ENST00000635625 ERICH3Q5RHP9 1530 aa19.21■□□□□ 0.67
PTPN11-205ENST00000635625 UBTFP17480 764 aaKnown RBP19.19■□□□□ 0.66
PTPN11-205ENST00000635625 CUX1P39880 1505 aa19.15■□□□□ 0.66
PTPN11-205ENST00000635625 CLIP1P30622 1438 aa19.1■□□□□ 0.65
PTPN11-205ENST00000635625 PPARGC1BQ86YN6 1023 aaKnown RBP19.1■□□□□ 0.65
PTPN11-205ENST00000635625 PRXQ9BXM0 1461 aa19.09■□□□□ 0.65
PTPN11-205ENST00000635625 RAPGEF2Q9Y4G8 1499 aa19.08■□□□□ 0.65
PTPN11-205ENST00000635625 NESP48681 1621 aa19.07■□□□□ 0.64
PTPN11-205ENST00000635625 KIF27Q86VH2 1401 aa19.06■□□□□ 0.64
PTPN11-205ENST00000635625 VPS8Q8N3P4 1428 aa19.06■□□□□ 0.64
PTPN11-205ENST00000635625 CADPSQ9ULU8 1353 aa19.04■□□□□ 0.64
PTPN11-205ENST00000635625 ERCC6Q03468 1493 aa18.95■□□□□ 0.62
PTPN11-205ENST00000635625 SLC4A1APQ9BWU0 796 aaKnown RBP18.89■□□□□ 0.61
PTPN11-205ENST00000635625 LAMC3Q9Y6N6 1575 aa18.88■□□□□ 0.61
PTPN11-205ENST00000635625 DCAF8L1A6NGE4 600 aa18.87■□□□□ 0.61
PTPN11-205ENST00000635625 DNMBPQ6XZF7 1577 aa18.86■□□□□ 0.61
PTPN11-205ENST00000635625 APLP2Q06481 763 aa18.85■□□□□ 0.61
PTPN11-205ENST00000635625 FGD5Q6ZNL6 1462 aa18.84■□□□□ 0.61
PTPN11-205ENST00000635625 FANCD2Q9BXW9 1451 aa18.84■□□□□ 0.61
PTPN11-205ENST00000635625 CUX2O14529 1486 aa18.83■□□□□ 0.61
PTPN11-205ENST00000635625 ARAP1Q96P48 1450 aa18.83■□□□□ 0.61
PTPN11-205ENST00000635625 CCER1Q8TC90 406 aaPredicted RBP18.83■□□□□ 0.6
PTPN11-205ENST00000635625 KIF21AQ7Z4S6 1674 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms