RNA–Protein interactions for RNA: ENST00000629380.2

SYNGAP1-208, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SYNGAP1, Length 9,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-208ENST00000629380 DCAF8L2P0C7V8 631 aa22.16■■□□□ 1.14
SYNGAP1-208ENST00000629380 PELP1Q8IZL8 1130 aaKnown RBP21.66■■□□□ 1.06
SYNGAP1-208ENST00000629380 NISCHQ9Y2I1 1504 aa21.63■■□□□ 1.05
SYNGAP1-208ENST00000629380 CCER1Q8TC90 406 aaPredicted RBP20.56■□□□□ 0.88
SYNGAP1-208ENST00000629380 APLP2Q06481 763 aa20.55■□□□□ 0.88
SYNGAP1-208ENST00000629380 FAM9AQ8IZU1 332 aaPredicted RBP20.54■□□□□ 0.88
SYNGAP1-208ENST00000629380 SUPT5HO00267 1087 aaKnown RBP20.49■□□□□ 0.87
SYNGAP1-208ENST00000629380 ERICH6Q7L0X2 663 aa20.45■□□□□ 0.86
SYNGAP1-208ENST00000629380 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
SYNGAP1-208ENST00000629380 MYT1Q01538 1121 aa20.2■□□□□ 0.82
SYNGAP1-208ENST00000629380 CENPBP07199 599 aaPredicted RBP20.14■□□□□ 0.81
SYNGAP1-208ENST00000629380 EHMT2Q96KQ7 1210 aa20■□□□□ 0.79
SYNGAP1-208ENST00000629380 NEFLP07196 543 aa19.92■□□□□ 0.78
SYNGAP1-208ENST00000629380 ZEB1P37275 1124 aaPredicted RBP19.87■□□□□ 0.77
SYNGAP1-208ENST00000629380 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
SYNGAP1-208ENST00000629380 DAXXQ9UER7 740 aaPredicted RBP19.66■□□□□ 0.74
SYNGAP1-208ENST00000629380 PCGF6Q9BYE7 350 aa19.57■□□□□ 0.72
SYNGAP1-208ENST00000629380 TTBK1Q5TCY1 1321 aaPredicted RBP19.53■□□□□ 0.72
SYNGAP1-208ENST00000629380 ATP1B4Q9UN42 357 aaPredicted RBP19.35■□□□□ 0.69
SYNGAP1-208ENST00000629380 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
SYNGAP1-208ENST00000629380 TRIM41Q8WV44 630 aa19.23■□□□□ 0.67
SYNGAP1-208ENST00000629380 UBTFP17480 764 aaKnown RBP19.18■□□□□ 0.66
SYNGAP1-208ENST00000629380 ZNF316A6NFI3 1004 aaPredicted RBP19.13■□□□□ 0.65
SYNGAP1-208ENST00000629380 RTL5Q5HYW3 569 aaPredicted RBP19.06■□□□□ 0.64
SYNGAP1-208ENST00000629380 ABCC9O60706 1549 aa18.91■□□□□ 0.62
SYNGAP1-208ENST00000629380 MYT1LQ9UL68 1186 aa18.88■□□□□ 0.61
SYNGAP1-208ENST00000629380 CLSPNQ9HAW4 1339 aa18.86■□□□□ 0.61
SYNGAP1-208ENST00000629380 POLR3GLQ9BT43 218 aa18.82■□□□□ 0.6
SYNGAP1-208ENST00000629380 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.79■□□□□ 0.6
SYNGAP1-208ENST00000629380 HNRNPUL2Q1KMD3 747 aaKnown RBP18.79■□□□□ 0.6
SYNGAP1-208ENST00000629380 TRIM26Q12899 539 aaPredicted RBP18.7■□□□□ 0.58
SYNGAP1-208ENST00000629380 SLC4A1APQ9BWU0 796 aaKnown RBP18.7■□□□□ 0.58
SYNGAP1-208ENST00000629380 ZBTB47Q9UFB7 747 aaPredicted RBP18.66■□□□□ 0.58
SYNGAP1-208ENST00000629380 PABPN1Q86U42 306 aaKnown RBP eCLIP18.52■□□□□ 0.56
SYNGAP1-208ENST00000629380 ITGAEP38570 1179 aa18.5■□□□□ 0.55
SYNGAP1-208ENST00000629380 HRCP23327 699 aa18.49■□□□□ 0.55
SYNGAP1-208ENST00000629380 CHIC1Q5VXU3 224 aa18.48■□□□□ 0.55
SYNGAP1-208ENST00000629380 CCDC180Q9P1Z9 1646 aa18.41■□□□□ 0.54
SYNGAP1-208ENST00000629380 PPARGC1BQ86YN6 1023 aaKnown RBP18.36■□□□□ 0.53
SYNGAP1-208ENST00000629380 CANXP27824 592 aaKnown RBP18.35■□□□□ 0.53
SYNGAP1-208ENST00000629380 CNGB1Q14028 1251 aaPredicted RBP18.35■□□□□ 0.53
SYNGAP1-208ENST00000629380 ANP32BQ92688 251 aaKnown RBP18.35■□□□□ 0.53
SYNGAP1-208ENST00000629380 NEFMP07197 916 aa18.33■□□□□ 0.52
SYNGAP1-208ENST00000629380 CDK11AQ9UQ88 783 aaPredicted RBP18.31■□□□□ 0.52
SYNGAP1-208ENST00000629380 DIEXFQ68CQ4 756 aaKnown RBP18.26■□□□□ 0.51
SYNGAP1-208ENST00000629380 GLIPR1L2Q4G1C9 344 aa18.23■□□□□ 0.51
SYNGAP1-208ENST00000629380 FBLN2P98095 1184 aa18.23■□□□□ 0.51
SYNGAP1-208ENST00000629380 ANP32AP39687 249 aaKnown RBP18.23■□□□□ 0.51
SYNGAP1-208ENST00000629380 ANP32CO43423 234 aa18.19■□□□□ 0.5
SYNGAP1-208ENST00000629380 SLC24A1O60721 1099 aa18.15■□□□□ 0.5
SYNGAP1-208ENST00000629380 FAM50AQ14320 339 aaKnown RBP18.14■□□□□ 0.49
SYNGAP1-208ENST00000629380 RB1CC1Q8TDY2 1594 aa18.13■□□□□ 0.49
SYNGAP1-208ENST00000629380 TRIM52Q96A61 297 aa18.1■□□□□ 0.49
SYNGAP1-208ENST00000629380 HSP90AA1P07900 732 aaKnown RBP18.1■□□□□ 0.49
SYNGAP1-208ENST00000629380 SCRIBQ14160 1630 aa18.07■□□□□ 0.48
SYNGAP1-208ENST00000629380 UPF2Q9HAU5 1272 aaKnown RBP18.04■□□□□ 0.48
SYNGAP1-208ENST00000629380 ZNF326Q5BKZ1 582 aaKnown RBP18■□□□□ 0.47
SYNGAP1-208ENST00000629380 ESF1Q9H501 851 aaKnown RBP17.99■□□□□ 0.47
SYNGAP1-208ENST00000629380 NPM1P06748 294 aaKnown RBP eCLIP17.99■□□□□ 0.47
SYNGAP1-208ENST00000629380 CDK11BP21127 795 aaKnown RBP17.96■□□□□ 0.47
SYNGAP1-208ENST00000629380 BCANQ96GW7 911 aa17.94■□□□□ 0.46
SYNGAP1-208ENST00000629380 BCL11AQ9H165 835 aa17.94■□□□□ 0.46
SYNGAP1-208ENST00000629380 NEUROD1Q13562 356 aa17.92■□□□□ 0.46
SYNGAP1-208ENST00000629380 EIF5BO60841 1220 aaKnown RBP17.87■□□□□ 0.45
SYNGAP1-208ENST00000629380 NACADO15069 1562 aa17.85■□□□□ 0.45
SYNGAP1-208ENST00000629380 ZCCHC6Q5VYS8 1495 aaKnown RBP17.84■□□□□ 0.45
SYNGAP1-208ENST00000629380 GTF3C3Q9Y5Q9 886 aa17.81■□□□□ 0.44
SYNGAP1-208ENST00000629380 NPM2Q86SE8 214 aaKnown RBP17.76■□□□□ 0.43
SYNGAP1-208ENST00000629380 LOC105371045A0A1W2PR82 267 aa17.71■□□□□ 0.43
SYNGAP1-208ENST00000629380 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.7■□□□□ 0.42
SYNGAP1-208ENST00000629380 MYH16Q9H6N6 1097 aa17.69■□□□□ 0.42
SYNGAP1-208ENST00000629380 TNNT2P45379 298 aaPredicted RBP17.65■□□□□ 0.42
SYNGAP1-208ENST00000629380 STAG3Q9UJ98 1225 aa17.65■□□□□ 0.42
SYNGAP1-208ENST00000629380 CHMP7Q8WUX9 453 aaPredicted RBP17.62■□□□□ 0.41
SYNGAP1-208ENST00000629380 ZNF777Q9ULD5 760 aaPredicted RBP17.6■□□□□ 0.41
SYNGAP1-208ENST00000629380 CSRNP3Q8WYN3 585 aa17.6■□□□□ 0.41
SYNGAP1-208ENST00000629380 ANP32EQ9BTT0 268 aa17.6■□□□□ 0.41
SYNGAP1-208ENST00000629380 TONSLQ96HA7 1378 aa17.6■□□□□ 0.41
SYNGAP1-208ENST00000629380 ERCC6Q03468 1493 aa17.59■□□□□ 0.41
SYNGAP1-208ENST00000629380 ACIN1Q9UKV3 1341 aaKnown RBP17.54■□□□□ 0.4
SYNGAP1-208ENST00000629380 NCLP19338 710 aaKnown RBP17.53■□□□□ 0.4
SYNGAP1-208ENST00000629380 P3H3Q8IVL6 736 aa17.53■□□□□ 0.4
SYNGAP1-208ENST00000629380 BECN1Q14457 450 aa17.53■□□□□ 0.4
SYNGAP1-208ENST00000629380 ARID3CA6NKF2 412 aa17.51■□□□□ 0.39
SYNGAP1-208ENST00000629380 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
SYNGAP1-208ENST00000629380 ZRSR1Q15695 479 aaKnown RBP17.51■□□□□ 0.39
SYNGAP1-208ENST00000629380 GOLGA6L22H0YM25 854 aa17.5■□□□□ 0.39
SYNGAP1-208ENST00000629380 TRIM44Q96DX7 344 aaPredicted RBP17.46■□□□□ 0.39
SYNGAP1-208ENST00000629380 CCDC136Q96JN2 1154 aa17.45■□□□□ 0.38
SYNGAP1-208ENST00000629380 DDRGK1Q96HY6 314 aa17.45■□□□□ 0.38
SYNGAP1-208ENST00000629380 WDR43Q15061 677 aaKnown RBP eCLIP17.43■□□□□ 0.389e-6■■■□□ 15.6
SYNGAP1-208ENST00000629380 CASC1Q6TDU7 716 aa17.43■□□□□ 0.38
SYNGAP1-208ENST00000629380 GOLGA6L6A8MZA4 724 aa17.4■□□□□ 0.38
SYNGAP1-208ENST00000629380 NBR1Q14596 966 aa17.39■□□□□ 0.38
SYNGAP1-208ENST00000629380 ARXQ96QS3 562 aa17.38■□□□□ 0.37
SYNGAP1-208ENST00000629380 HNRNPUQ00839 825 aaKnown RBP eCLIP17.38■□□□□ 0.37
SYNGAP1-208ENST00000629380 FKBP8Q14318 412 aa17.38■□□□□ 0.37
SYNGAP1-208ENST00000629380 TSPY4P0CV99 314 aa17.36■□□□□ 0.37
SYNGAP1-208ENST00000629380 TSPY10P0CW01 314 aa17.36■□□□□ 0.37
SYNGAP1-208ENST00000629380 CHGAP10645 457 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms