RNA–Protein interactions for RNA: ENST00000625705.1

NPLOC4-221, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5 BASIC

Gene NPLOC4, Length 405 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-221ENST00000625705 AEBP2Q6ZN18 517 aaPredicted RBP22.51■■□□□ 1.19
NPLOC4-221ENST00000625705 CHIC1Q5VXU3 224 aa21.46■■□□□ 1.03
NPLOC4-221ENST00000625705 SENP3Q9H4L4 574 aaPredicted RBP19.15■□□□□ 0.66
NPLOC4-221ENST00000625705 PHF23Q9BUL5 403 aaPredicted RBP18.94■□□□□ 0.62
NPLOC4-221ENST00000625705 FOXD1Q16676 465 aa17.86■□□□□ 0.45
NPLOC4-221ENST00000625705 NISCHQ9Y2I1 1504 aa17.25■□□□□ 0.35
NPLOC4-221ENST00000625705 PLPPR3Q6T4P5 718 aa17.19■□□□□ 0.34
NPLOC4-221ENST00000625705 PPP6R1Q9UPN7 881 aa16.81■□□□□ 0.28
NPLOC4-221ENST00000625705 ADRA2BP18089 450 aa16.78■□□□□ 0.28
NPLOC4-221ENST00000625705 PIAS4Q8N2W9 510 aaPredicted RBP16.72■□□□□ 0.27
NPLOC4-221ENST00000625705 MSH5O43196 834 aa16.63■□□□□ 0.25
NPLOC4-221ENST00000625705 POTEDQ86YR6 584 aa16.07■□□□□ 0.16
NPLOC4-221ENST00000625705 MAPK8IP2Q13387 824 aaPredicted RBP15.38■□□□□ 0.05
NPLOC4-221ENST00000625705 CCDC180Q9P1Z9 1646 aa15.36■□□□□ 0.05
NPLOC4-221ENST00000625705 SCAF1Q9H7N4 1312 aaKnown RBP15.29■□□□□ 0.04
NPLOC4-221ENST00000625705 DMRT2Q9Y5R5 561 aa15.21■□□□□ 0.03
NPLOC4-221ENST00000625705 PPP4R3CPQ6ZMV5 832 aa15.11■□□□□ 0.01
NPLOC4-221ENST00000625705 ABCC9O60706 1549 aa14.99□□□□□ -0.01
NPLOC4-221ENST00000625705 CNKSR2Q8WXI2 1034 aa14.78□□□□□ -0.04
NPLOC4-221ENST00000625705 HOXD11P31277 338 aaPredicted RBP14.68□□□□□ -0.06
NPLOC4-221ENST00000625705 DCAF8L1A6NGE4 600 aa14.63□□□□□ -0.07
NPLOC4-221ENST00000625705 RNF216Q9NWF9 866 aaPredicted RBP14.61□□□□□ -0.07
NPLOC4-221ENST00000625705 NCBP3Q53F19 620 aaKnown RBP14.55□□□□□ -0.08
NPLOC4-221ENST00000625705 DCAF8L2P0C7V8 631 aa14.5□□□□□ -0.09
NPLOC4-221ENST00000625705 RB1CC1Q8TDY2 1594 aa14.44□□□□□ -0.1
NPLOC4-221ENST00000625705 NACADO15069 1562 aa14.41□□□□□ -0.1
NPLOC4-221ENST00000625705 ZCCHC6Q5VYS8 1495 aaKnown RBP14.38□□□□□ -0.11
NPLOC4-221ENST00000625705 NPM3O75607 178 aaKnown RBP14.35□□□□□ -0.11
NPLOC4-221ENST00000625705 MYO15BQ96JP2 1530 aa14.27□□□□□ -0.12
NPLOC4-221ENST00000625705 CACNB1Q02641 598 aaPredicted RBP14.24□□□□□ -0.13
NPLOC4-221ENST00000625705 DCAF1Q9Y4B6 1507 aa14.24□□□□□ -0.13
NPLOC4-221ENST00000625705 RNF39Q9H2S5 420 aa14.21□□□□□ -0.13
NPLOC4-221ENST00000625705 KCNA4P22459 653 aa14.2□□□□□ -0.14
NPLOC4-221ENST00000625705 DNAJC5BQ9UF47 199 aa14.1□□□□□ -0.15
NPLOC4-221ENST00000625705 UNC13AQ9UPW8 1703 aa14.1□□□□□ -0.15
NPLOC4-221ENST00000625705 SCRIBQ14160 1630 aa14.05□□□□□ -0.16
NPLOC4-221ENST00000625705 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.03□□□□□ -0.161e-6■■□□□ 13.2
NPLOC4-221ENST00000625705 C1QBPQ07021 282 aaKnown RBP14□□□□□ -0.17
NPLOC4-221ENST00000625705 PABPN1Q86U42 306 aaKnown RBP eCLIP13.99□□□□□ -0.17
NPLOC4-221ENST00000625705 BICRAQ9NZM4 1560 aa13.92□□□□□ -0.18
NPLOC4-221ENST00000625705 SHROOM4Q9ULL8 1493 aa13.81□□□□□ -0.2
NPLOC4-221ENST00000625705 U3KPZ7 1027 aaPredicted RBP13.73□□□□□ -0.21
NPLOC4-221ENST00000625705 SLC4A2P04920 1241 aa13.68□□□□□ -0.22
NPLOC4-221ENST00000625705 EIF4G1Q04637 1599 aaKnown RBP13.6□□□□□ -0.23
NPLOC4-221ENST00000625705 CC2D2AQ9P2K1 1620 aa13.54□□□□□ -0.24
NPLOC4-221ENST00000625705 SPINK5Q9NQ38 1064 aaPredicted RBP13.52□□□□□ -0.25
NPLOC4-221ENST00000625705 CAPN15O75808 1086 aa13.49□□□□□ -0.25
NPLOC4-221ENST00000625705 CECR2Q9BXF3 1484 aa13.44□□□□□ -0.26
NPLOC4-221ENST00000625705 SLC4A1APQ9BWU0 796 aaKnown RBP13.42□□□□□ -0.26
NPLOC4-221ENST00000625705 BAZ1AQ9NRL2 1556 aaPredicted RBP13.41□□□□□ -0.26
NPLOC4-221ENST00000625705 SMARCA4P51532 1647 aa13.4□□□□□ -0.26
NPLOC4-221ENST00000625705 DSG3P32926 999 aa13.37□□□□□ -0.27
NPLOC4-221ENST00000625705 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.35□□□□□ -0.27
NPLOC4-221ENST00000625705 HNRNPUL2Q1KMD3 747 aaKnown RBP13.35□□□□□ -0.27
NPLOC4-221ENST00000625705 APLP2Q06481 763 aa13.32□□□□□ -0.28
NPLOC4-221ENST00000625705 SMARCA2P51531 1590 aa13.32□□□□□ -0.28
NPLOC4-221ENST00000625705 TRHP20396 242 aaPredicted RBP13.31□□□□□ -0.28
NPLOC4-221ENST00000625705 MROH2BQ7Z745 1585 aa13.3□□□□□ -0.28
NPLOC4-221ENST00000625705 SAMD1Q6SPF0 538 aaPredicted RBP13.29□□□□□ -0.28
NPLOC4-221ENST00000625705 ATAD2BQ9ULI0 1458 aa13.28□□□□□ -0.28
NPLOC4-221ENST00000625705 MYCNP04198 464 aaPredicted RBP13.25□□□□□ -0.29
NPLOC4-221ENST00000625705 NCAPD3P42695 1498 aa13.24□□□□□ -0.29
NPLOC4-221ENST00000625705 BAZ1BQ9UIG0 1483 aaKnown RBP13.24□□□□□ -0.29
NPLOC4-221ENST00000625705 ZNF219Q9P2Y4 722 aaPredicted RBP13.24□□□□□ -0.29
NPLOC4-221ENST00000625705 HMGXB3Q12766 1538 aa13.23□□□□□ -0.29
NPLOC4-221ENST00000625705 PEG3Q9GZU2 1588 aa13.21□□□□□ -0.29
NPLOC4-221ENST00000625705 ABCB7O75027 752 aa13.21□□□□□ -0.29
NPLOC4-221ENST00000625705 WIZO95785 1651 aa13.19□□□□□ -0.3
NPLOC4-221ENST00000625705 FOXD4L1Q9NU39 408 aa13.18□□□□□ -0.3
NPLOC4-221ENST00000625705 RSF1Q96T23 1441 aaPredicted RBP13.14□□□□□ -0.31
NPLOC4-221ENST00000625705 ZBTB22O15209 634 aa13.06□□□□□ -0.32
NPLOC4-221ENST00000625705 TOP2AP11388 1531 aaKnown RBP13.05□□□□□ -0.32
NPLOC4-221ENST00000625705 POLA2Q14181 598 aa12.98□□□□□ -0.33
NPLOC4-221ENST00000625705 ATF5Q9Y2D1 282 aaPredicted RBP12.98□□□□□ -0.33
NPLOC4-221ENST00000625705 ERCC6Q03468 1493 aa12.97□□□□□ -0.33
NPLOC4-221ENST00000625705 NESP48681 1621 aa12.95□□□□□ -0.34
NPLOC4-221ENST00000625705 LAMC3Q9Y6N6 1575 aa12.95□□□□□ -0.34
NPLOC4-221ENST00000625705 SUPT5HO00267 1087 aaKnown RBP12.95□□□□□ -0.34
NPLOC4-221ENST00000625705 CADPSQ9ULU8 1353 aa12.88□□□□□ -0.35
NPLOC4-221ENST00000625705 PDS5BQ9NTI5 1447 aa12.87□□□□□ -0.35
NPLOC4-221ENST00000625705 CCDC88BA6NC98 1476 aa12.86□□□□□ -0.35
NPLOC4-221ENST00000625705 KIF21AQ7Z4S6 1674 aa12.84□□□□□ -0.35
NPLOC4-221ENST00000625705 CFTRP13569 1480 aa12.81□□□□□ -0.36
NPLOC4-221ENST00000625705 PRDM2Q13029 1718 aa12.81□□□□□ -0.36
NPLOC4-221ENST00000625705 CEP164Q9UPV0 1460 aa12.78□□□□□ -0.36
NPLOC4-221ENST00000625705 FANCD2Q9BXW9 1451 aa12.78□□□□□ -0.36
NPLOC4-221ENST00000625705 THOC2Q8NI27 1593 aaKnown RBP12.75□□□□□ -0.37
NPLOC4-221ENST00000625705 CUX2O14529 1486 aa12.74□□□□□ -0.37
NPLOC4-221ENST00000625705 ATXN8OSP0DMR3 200 aa12.74□□□□□ -0.37
NPLOC4-221ENST00000625705 MRC2Q9UBG0 1479 aa12.73□□□□□ -0.37
NPLOC4-221ENST00000625705 RBM42Q9BTD8 480 aaKnown RBP12.72□□□□□ -0.37
NPLOC4-221ENST00000625705 ZBTB12Q9Y330 459 aaPredicted RBP12.67□□□□□ -0.38
NPLOC4-221ENST00000625705 WDR62O43379 1518 aa12.67□□□□□ -0.38
NPLOC4-221ENST00000625705 POTEHQ6S545 545 aa12.62□□□□□ -0.39
NPLOC4-221ENST00000625705 URB2Q14146 1524 aaKnown RBP12.62□□□□□ -0.39
NPLOC4-221ENST00000625705 ABCC8Q09428 1581 aa12.58□□□□□ -0.4
NPLOC4-221ENST00000625705 DNMBPQ6XZF7 1577 aa12.57□□□□□ -0.4
NPLOC4-221ENST00000625705 TOPBP1Q92547 1522 aa12.57□□□□□ -0.4
NPLOC4-221ENST00000625705 CSRNP3Q8WYN3 585 aa12.56□□□□□ -0.4
NPLOC4-221ENST00000625705 OSCARQ8IYS5 282 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms