RNA–Protein interactions for RNA: ENST00000625286.1

DDX41-218, Transcript of DEAD-box helicase 41, humanhuman

TSL 5 BASIC

Gene DDX41, Length 150 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-218ENST00000625286 NISCHQ9Y2I1 1504 aa28.07■■■□□ 2.08
DDX41-218ENST00000625286 ABCC9O60706 1549 aa25.38■■□□□ 1.65
DDX41-218ENST00000625286 CCDC180Q9P1Z9 1646 aa25.15■■□□□ 1.62
DDX41-218ENST00000625286 DNAJC5BQ9UF47 199 aa24.09■■□□□ 1.45
DDX41-218ENST00000625286 RB1CC1Q8TDY2 1594 aa24.02■■□□□ 1.44
DDX41-218ENST00000625286 NACADO15069 1562 aa23.83■■□□□ 1.41
DDX41-218ENST00000625286 DCAF8L2P0C7V8 631 aa23.76■■□□□ 1.39
DDX41-218ENST00000625286 PABPN1Q86U42 306 aaKnown RBP eCLIP23.68■■□□□ 1.38
DDX41-218ENST00000625286 UNC13AQ9UPW8 1703 aa23.57■■□□□ 1.36
DDX41-218ENST00000625286 MYO15BQ96JP2 1530 aa23.47■■□□□ 1.35
DDX41-218ENST00000625286 BICRAQ9NZM4 1560 aa23.44■■□□□ 1.34
DDX41-218ENST00000625286 ZCCHC6Q5VYS8 1495 aaKnown RBP23.21■■□□□ 1.31
DDX41-218ENST00000625286 DCAF1Q9Y4B6 1507 aa23.13■■□□□ 1.29
DDX41-218ENST00000625286 SCRIBQ14160 1630 aa22.97■■□□□ 1.27
DDX41-218ENST00000625286 SHROOM4Q9ULL8 1493 aa22.95■■□□□ 1.26
DDX41-218ENST00000625286 CC2D2AQ9P2K1 1620 aa22.91■■□□□ 1.26
DDX41-218ENST00000625286 CECR2Q9BXF3 1484 aa22.85■■□□□ 1.25
DDX41-218ENST00000625286 EIF4G1Q04637 1599 aaKnown RBP22.81■■□□□ 1.24
DDX41-218ENST00000625286 DNAJC5Q9H3Z4 198 aa22.1■■□□□ 1.13
DDX41-218ENST00000625286 NCAPD3P42695 1498 aa22.06■■□□□ 1.12
DDX41-218ENST00000625286 ATAD2BQ9ULI0 1458 aa21.98■■□□□ 1.11
DDX41-218ENST00000625286 SMARCA4P51532 1647 aa21.9■■□□□ 1.1
DDX41-218ENST00000625286 CUX2O14529 1486 aa21.85■■□□□ 1.09
DDX41-218ENST00000625286 ERCC6Q03468 1493 aa21.83■■□□□ 1.09
DDX41-218ENST00000625286 SMARCA2P51531 1590 aa21.83■■□□□ 1.09
DDX41-218ENST00000625286 HMGXB3Q12766 1538 aa21.83■■□□□ 1.09
DDX41-218ENST00000625286 NESP48681 1621 aa21.81■■□□□ 1.08
DDX41-218ENST00000625286 BAZ1AQ9NRL2 1556 aaPredicted RBP21.74■■□□□ 1.07
DDX41-218ENST00000625286 BAZ1BQ9UIG0 1483 aaKnown RBP21.71■■□□□ 1.07
DDX41-218ENST00000625286 PEG3Q9GZU2 1588 aa21.69■■□□□ 1.06
DDX41-218ENST00000625286 MROH2BQ7Z745 1585 aa21.67■■□□□ 1.06
DDX41-218ENST00000625286 THOC2Q8NI27 1593 aaKnown RBP21.55■■□□□ 1.04
DDX41-218ENST00000625286 LAMC3Q9Y6N6 1575 aa21.52■■□□□ 1.04
DDX41-218ENST00000625286 KIF21AQ7Z4S6 1674 aa21.47■■□□□ 1.03
DDX41-218ENST00000625286 PDS5BQ9NTI5 1447 aa21.4■■□□□ 1.02
DDX41-218ENST00000625286 WIZO95785 1651 aa21.39■■□□□ 1.01
DDX41-218ENST00000625286 CADPSQ9ULU8 1353 aa21.38■■□□□ 1.01
DDX41-218ENST00000625286 MRC2Q9UBG0 1479 aa21.25■□□□□ 0.99
DDX41-218ENST00000625286 WDR62O43379 1518 aa21.21■□□□□ 0.99
DDX41-218ENST00000625286 RSF1Q96T23 1441 aaPredicted RBP21.17■□□□□ 0.98
DDX41-218ENST00000625286 FANCD2Q9BXW9 1451 aa21.13■□□□□ 0.97
DDX41-218ENST00000625286 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
DDX41-218ENST00000625286 CFTRP13569 1480 aa21.11■□□□□ 0.97
DDX41-218ENST00000625286 TOP2AP11388 1531 aaKnown RBP21.04■□□□□ 0.96
DDX41-218ENST00000625286 TRIM41Q8WV44 630 aa21.04■□□□□ 0.96
DDX41-218ENST00000625286 URB2Q14146 1524 aaKnown RBP21■□□□□ 0.95
DDX41-218ENST00000625286 OSCARQ8IYS5 282 aa20.89■□□□□ 0.93
DDX41-218ENST00000625286 CCDC88BA6NC98 1476 aa20.88■□□□□ 0.93
DDX41-218ENST00000625286 PRDM2Q13029 1718 aa20.81■□□□□ 0.92
DDX41-218ENST00000625286 ZNF608Q9ULD9 1512 aaPredicted RBP20.79■□□□□ 0.92
DDX41-218ENST00000625286 TOPBP1Q92547 1522 aa20.73■□□□□ 0.91
DDX41-218ENST00000625286 IFT140Q96RY7 1462 aa20.71■□□□□ 0.91
DDX41-218ENST00000625286 RIMBP3CA6NJZ7 1639 aa20.64■□□□□ 0.89
DDX41-218ENST00000625286 RIMBP3BA6NNM3 1639 aa20.64■□□□□ 0.89
DDX41-218ENST00000625286 RIMBP3Q9UFD9 1639 aa20.64■□□□□ 0.89
DDX41-218ENST00000625286 DNMBPQ6XZF7 1577 aa20.59■□□□□ 0.89
DDX41-218ENST00000625286 EIF4G3O43432 1585 aaKnown RBP20.59■□□□□ 0.89
DDX41-218ENST00000625286 ABCC8Q09428 1581 aa20.59■□□□□ 0.89
DDX41-218ENST00000625286 AQRO60306 1485 aaKnown RBP eCLIP20.58■□□□□ 0.894e-10■■■■□ 23.3
DDX41-218ENST00000625286 TARBP1Q13395 1621 aaKnown RBP20.56■□□□□ 0.88
DDX41-218ENST00000625286 ARHGEF11O15085 1522 aa20.55■□□□□ 0.88
DDX41-218ENST00000625286 POLA1P09884 1462 aaPredicted RBP20.5■□□□□ 0.87
DDX41-218ENST00000625286 RAD54L2Q9Y4B4 1467 aa20.48■□□□□ 0.87
DDX41-218ENST00000625286 CHD1O14646 1710 aa20.47■□□□□ 0.87
DDX41-218ENST00000625286 CYB5RLQ6IPT4 315 aa20.44■□□□□ 0.86
DDX41-218ENST00000625286 TDRD9Q8NDG6 1382 aaKnown RBP20.43■□□□□ 0.86
DDX41-218ENST00000625286 FBLN2P98095 1184 aa20.41■□□□□ 0.86
DDX41-218ENST00000625286 SOGA1O94964 1423 aa20.41■□□□□ 0.86
DDX41-218ENST00000625286 ARAP1Q96P48 1450 aa20.37■□□□□ 0.85
DDX41-218ENST00000625286 FGD5Q6ZNL6 1462 aa20.35■□□□□ 0.85
DDX41-218ENST00000625286 CUX1P39880 1505 aa20.34■□□□□ 0.85
DDX41-218ENST00000625286 SNAPC4Q5SXM2 1469 aa20.3■□□□□ 0.84
DDX41-218ENST00000625286 CLASP1Q7Z460 1538 aa20.25■□□□□ 0.83
DDX41-218ENST00000625286 CHMP7Q8WUX9 453 aaPredicted RBP20.23■□□□□ 0.83
DDX41-218ENST00000625286 WDR97A6NE52 1622 aa20.23■□□□□ 0.83
DDX41-218ENST00000625286 GRIN2BQ13224 1484 aa20.21■□□□□ 0.83
DDX41-218ENST00000625286 MAGI1Q96QZ7 1491 aaPredicted RBP20.2■□□□□ 0.82
DDX41-218ENST00000625286 TRHP20396 242 aaPredicted RBP20.2■□□□□ 0.82
DDX41-218ENST00000625286 SYNJ2O15056 1496 aa20.17■□□□□ 0.82
DDX41-218ENST00000625286 SYNJ1O43426 1573 aa20.15■□□□□ 0.82
DDX41-218ENST00000625286 GAPVD1Q14C86 1478 aa20.13■□□□□ 0.81
DDX41-218ENST00000625286 SUPT5HO00267 1087 aaKnown RBP20.12■□□□□ 0.81
DDX41-218ENST00000625286 PBRM1Q86U86 1689 aa20.11■□□□□ 0.81
DDX41-218ENST00000625286 ABCA10Q8WWZ4 1543 aa20.11■□□□□ 0.81
DDX41-218ENST00000625286 ABCA5Q8WWZ7 1642 aa20.09■□□□□ 0.81
DDX41-218ENST00000625286 ERCC6L2Q5T890 1561 aa20■□□□□ 0.79
DDX41-218ENST00000625286 WRNQ14191 1432 aaPredicted RBP eCLIP19.97■□□□□ 0.79
DDX41-218ENST00000625286 GRIN2AQ12879 1464 aa19.96■□□□□ 0.79
DDX41-218ENST00000625286 TOP2BQ02880 1626 aa19.94■□□□□ 0.78
DDX41-218ENST00000625286 CEP170Q5SW79 1584 aa19.93■□□□□ 0.78
DDX41-218ENST00000625286 BIVM-ERCC5R4GMW8 1640 aa19.93■□□□□ 0.78
DDX41-218ENST00000625286 NUP160Q12769 1436 aa19.93■□□□□ 0.78
DDX41-218ENST00000625286 ADAMTS12P58397 1594 aa19.92■□□□□ 0.78
DDX41-218ENST00000625286 FHAD1B1AJZ9 1412 aa19.86■□□□□ 0.77
DDX41-218ENST00000625286 SHROOM2Q13796 1616 aa19.84■□□□□ 0.77
DDX41-218ENST00000625286 ERICH3Q5RHP9 1530 aa19.81■□□□□ 0.76
DDX41-218ENST00000625286 PRG4Q92954 1404 aaPredicted RBP19.75■□□□□ 0.75
DDX41-218ENST00000625286 JPH4Q96JJ6 628 aa19.74■□□□□ 0.75
DDX41-218ENST00000625286 KIF13AQ9H1H9 1805 aa19.67■□□□□ 0.74
DDX41-218ENST00000625286 AEBP2Q6ZN18 517 aaPredicted RBP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms